Strain Fitness in Shewanella oneidensis MR-1 around SO2350

Experiment: nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 5 mM
2,456,703	+				+0.3
2,456,781	+				+2.6
2,457,364	+				+0.4
2,457,364	+				-1.0
2,457,443	+				-1.6
2,457,451	-				-1.8
2,457,663	+	aspC-1	SO2350	0.20	-3.8
2,457,663	+	aspC-1	SO2350	0.20	-2.2
2,457,671	-	aspC-1	SO2350	0.20	-0.6
2,457,671	-	aspC-1	SO2350	0.20	-0.9
2,457,689	-	aspC-1	SO2350	0.22	+0.2
2,457,815	+	aspC-1	SO2350	0.32	-2.7
2,457,929	+	aspC-1	SO2350	0.42	-0.6
2,457,981	-	aspC-1	SO2350	0.46	-1.3
2,458,028	+	aspC-1	SO2350	0.50	-1.4
2,458,036	-	aspC-1	SO2350	0.51	-2.1
2,458,105	+	aspC-1	SO2350	0.57	-1.5
2,458,118	-	aspC-1	SO2350	0.58	-1.0
2,458,508	-				-2.7
2,458,883	+		SO2351	0.18	+0.1
2,458,908	+		SO2351	0.21	+0.4
2,458,934	+		SO2351	0.23	-0.3
2,459,136	-		SO2351	0.45	+0.3
2,459,141	+		SO2351	0.46	+0.4
2,459,162	-		SO2351	0.48	-0.0
2,459,182	+		SO2351	0.50	+0.1
2,459,190	-		SO2351	0.51	+1.3
2,459,310	-		SO2351	0.64	+1.4
2,459,357	+		SO2351	0.69	+0.4
2,459,365	-		SO2351	0.70	+0.5
2,459,485	+		SO2351	0.83	-0.2
2,459,493	-		SO2351	0.84	+1.2