Strain Fitness in Shewanella oneidensis MR-1 around SO2340

Experiment: nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 5 mM
2,446,818	-		SO2339	0.38	-1.1
2,446,862	+		SO2339	0.42	-1.0
2,446,868	-		SO2339	0.42	-1.4
2,446,968	-		SO2339	0.51	-0.7
2,447,090	-		SO2339	0.61	+0.7
2,447,151	+		SO2339	0.66	-0.6
2,447,160	-		SO2339	0.67	+0.3
2,447,196	+		SO2339	0.70	+0.1
2,447,420	-		SO2339	0.89	-0.6
2,447,675	+		SO2340	0.12	-0.2
2,447,683	-		SO2340	0.13	-0.6
2,447,731	+		SO2340	0.18	-0.8
2,447,739	-		SO2340	0.19	-0.5
2,447,773	+		SO2340	0.22	-0.6
2,447,870	-		SO2340	0.32	-1.4
2,447,876	+		SO2340	0.33	-1.2
2,447,876	+		SO2340	0.33	-0.6
2,447,884	-		SO2340	0.34	-0.0
2,447,891	+		SO2340	0.34	-0.9
2,447,899	-		SO2340	0.35	-0.9
2,447,937	+		SO2340	0.39	-0.3
2,448,005	+		SO2340	0.46	-1.2
2,448,008	-		SO2340	0.46	-0.5
2,448,135	+		SO2340	0.59	+0.6
2,448,158	-		SO2340	0.62	-0.2
2,448,160	+		SO2340	0.62	+0.1
2,448,160	+		SO2340	0.62	-1.0
2,448,160	+		SO2340	0.62	-0.9
2,448,160	+		SO2340	0.62	-1.3
2,448,168	-		SO2340	0.63	-0.7
2,448,168	-		SO2340	0.63	-2.3
2,448,296	-		SO2340	0.76	-0.8
2,448,418	+		SO2340	0.88	-1.3
2,448,664	+				-0.7
2,448,764	-		SO2341	0.14	-1.0
2,448,838	+		SO2341	0.18	-3.1
2,449,005	-		SO2341	0.29	-0.4
2,449,005	-		SO2341	0.29	-0.0
2,449,005	-		SO2341	0.29	-0.2
2,449,019	-		SO2341	0.30	-0.5
2,449,059	-		SO2341	0.32	-0.7
2,449,102	+		SO2341	0.35	+0.5
2,449,221	-		SO2341	0.42	+0.0
2,449,221	-		SO2341	0.42	-0.1
2,449,316	-		SO2341	0.48	-0.4
2,449,349	-		SO2341	0.50	-0.8
2,449,404	-		SO2341	0.54	-0.6
2,449,419	-		SO2341	0.55	+0.2
2,449,485	+		SO2341	0.59	-0.8