Strain Fitness in Shewanella oneidensis MR-1 around SO2054

Experiment: nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 5 mM
2,153,237	-		SO2053	0.55	+0.8
2,153,268	+		SO2053	0.59	+0.1
2,153,306	-		SO2053	0.63	+0.4
2,153,361	-		SO2053	0.69	+0.2
2,153,398	+		SO2053	0.74	-0.5
2,153,455	+		SO2053	0.80	+0.2
2,153,774	-				-0.8
2,153,794	+				-0.4
2,153,889	+				-0.0
2,153,889	+				-1.0
2,153,897	-				+0.0
2,153,897	-				+0.2
2,153,957	-				-0.8
2,153,971	+				-0.3
2,153,979	-	adhC	SO2054	0.10	-1.5
2,154,036	+	adhC	SO2054	0.15	-0.0
2,154,103	+	adhC	SO2054	0.21	-0.2
2,154,111	-	adhC	SO2054	0.22	-0.6
2,154,223	+	adhC	SO2054	0.32	+0.1
2,154,394	-	adhC	SO2054	0.47	-1.2
2,154,402	+	adhC	SO2054	0.48	-0.1
2,154,425	-	adhC	SO2054	0.50	-1.1
2,154,696	-				+1.4
2,154,721	+	adhC	SO2054	0.76	-0.2
2,154,721	+	adhC	SO2054	0.76	+0.5
2,154,721	+	adhC	SO2054	0.76	+0.0
2,154,755	+	adhC	SO2054	0.79	+0.1
2,154,832	+	adhC	SO2054	0.85	-0.7
2,154,840	-	adhC	SO2054	0.86	+0.2
2,154,885	+	adhC	SO2054	0.90	-0.7
2,155,004	+				+0.4
2,155,076	+				+0.2
2,155,077	+				+0.3
2,155,085	-				+0.0
2,155,085	-				+0.4
2,155,130	+				-0.3
2,155,268	-		SO2055	0.15	+0.4
2,155,302	-		SO2055	0.20	+0.1
2,155,581	+		SO2055	0.53	+1.1
2,155,588	+		SO2055	0.54	+1.0
2,155,739	+		SO2055	0.72	+0.6
2,155,780	-		SO2055	0.76	-0.4
2,155,837	-		SO2055	0.83	+0.0
2,155,844	+		SO2055	0.84	+0.1
2,155,844	+		SO2055	0.84	-1.0
2,155,852	-		SO2055	0.85	-0.6
2,155,852	-		SO2055	0.85	-0.6
2,155,872	-		SO2055	0.87	-0.3
2,155,914	-				-1.4
2,155,934	+				+0.3