Strain Fitness in Shewanella oneidensis MR-1 around SO1953

Experiment: nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 5 mM
2,058,685	-	ggt-2	SO1952	0.50	-0.9
2,058,702	+	ggt-2	SO1952	0.51	+0.2
2,058,800	+	ggt-2	SO1952	0.56	+0.4
2,058,881	+	ggt-2	SO1952	0.61	-1.1
2,058,958	-	ggt-2	SO1952	0.65	+0.2
2,059,107	+	ggt-2	SO1952	0.74	+0.1
2,059,300	+	ggt-2	SO1952	0.85	+0.5
2,059,318	+	ggt-2	SO1952	0.86	+0.0
2,059,478	-				-0.1
2,059,543	-				+0.1
2,059,543	-				-0.5
2,059,673	-				-0.0
2,059,781	+				+0.3
2,059,781	+				-0.0
2,059,781	+				+0.1
2,059,789	-				+0.2
2,059,789	-				-0.0
2,059,789	-				+0.6
2,059,976	-		SO1953	0.24	-0.0
2,060,007	+		SO1953	0.26	+1.9
2,060,036	+		SO1953	0.28	-0.0
2,060,044	-		SO1953	0.29	+0.4
2,060,388	-		SO1953	0.55	-0.4
2,060,422	+		SO1953	0.58	-0.1
2,060,565	+		SO1953	0.69	-0.5
2,060,619	-		SO1953	0.73	+0.3
2,060,696	+		SO1953	0.79	+0.2
2,060,816	+		SO1953	0.88	-0.2
2,060,895	+				+0.1
2,060,941	+				+0.2
2,061,170	+		SO1954	0.20	+0.3
2,061,170	+		SO1954	0.20	+0.4
2,061,170	+		SO1954	0.20	+0.2
2,061,170	+		SO1954	0.20	+0.2
2,061,170	+		SO1954	0.20	+0.0
2,061,170	+		SO1954	0.20	+0.2
2,061,173	-		SO1954	0.21	-0.0
2,061,178	-		SO1954	0.21	-0.8
2,061,199	-		SO1954	0.25	-0.9
2,061,201	+		SO1954	0.25	+0.0
2,061,209	+		SO1954	0.26	-0.1
2,061,209	-		SO1954	0.26	+0.5
2,061,282	+		SO1954	0.38	+0.5
2,061,283	+		SO1954	0.38	+0.6
2,061,283	+		SO1954	0.38	+0.7
2,061,283	+		SO1954	0.38	+0.3
2,061,283	+		SO1954	0.38	+0.1
2,061,283	+		SO1954	0.38	-0.5
2,061,291	-		SO1954	0.39	+0.3
2,061,291	-		SO1954	0.39	-0.1
2,061,291	-		SO1954	0.39	+0.3
2,061,291	-		SO1954	0.39	+0.1
2,061,408	+		SO1954	0.58	-1.4
2,061,515	-		SO1954	0.75	+0.1
2,061,520	+		SO1954	0.76	+1.1
2,061,520	+		SO1954	0.76	-1.1
2,061,520	+		SO1954	0.76	+0.2
2,061,528	-		SO1954	0.77	-0.4
2,061,528	-		SO1954	0.77	-0.3
2,061,528	-		SO1954	0.77	+0.5
2,061,528	-		SO1954	0.77	-0.2
2,061,528	-		SO1954	0.77	-1.0
2,061,550	+		SO1954	0.81	-0.1
2,061,554	+		SO1954	0.82	+0.2
2,061,558	-		SO1954	0.82	+0.8
2,061,592	+		SO1954	0.88	+0.5
2,061,592	+		SO1954	0.88	+0.3
2,061,600	-		SO1954	0.89	+0.3
2,061,669	+				+1.7
2,061,677	-				-0.2
2,061,709	-				+0.2
2,061,748	+				-0.7
2,061,748	+				+0.0
2,061,786	+				-0.0
2,061,794	-				+0.5
2,061,804	-				+0.2
2,061,836	+				+0.1
2,061,960	+				-0.4
2,061,960	+				+0.1
2,061,960	+				+0.9