Strain Fitness in Shewanella oneidensis MR-1 around SO1857

Experiment: nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 5 mM
1,947,174	-				-0.0
1,947,285	+	rmf	SO1855	0.41	+0.0
1,947,292	+	rmf	SO1855	0.45	-0.6
1,947,338	-	rmf	SO1855	0.71	-0.1
1,947,420	-				+0.5
1,947,426	+				+1.1
1,947,434	-				-1.5
1,947,454	-				+0.4
1,947,495	+				-0.6
1,947,712	-	fabA	SO1856	0.42	+1.7
1,947,972	-				-1.0
1,948,064	-				-0.6
1,948,178	+				-1.3
1,948,178	+				-0.1
1,948,186	-				+0.4
1,948,186	-				-0.3
1,948,293	+		SO1857	0.12	-1.5
1,948,293	+		SO1857	0.12	-0.0
1,948,306	-		SO1857	0.13	-0.6
1,948,383	-		SO1857	0.17	-0.5
1,948,508	+		SO1857	0.24	+1.4
1,948,579	-		SO1857	0.28	-0.1
1,948,579	-		SO1857	0.28	+0.5
1,948,624	-		SO1857	0.31	-0.8
1,948,645	-		SO1857	0.32	-0.4
1,948,759	+		SO1857	0.39	-0.6
1,948,773	-		SO1857	0.40	+0.2
1,948,773	-		SO1857	0.40	-0.4
1,948,793	+		SO1857	0.41	-0.1
1,948,809	-		SO1857	0.42	-0.7
1,948,927	-		SO1857	0.49	-0.2
1,948,968	-		SO1857	0.51	-0.8
1,949,077	-		SO1857	0.57	+0.4
1,949,077	-		SO1857	0.57	-0.0
1,949,278	-		SO1857	0.69	-0.8
1,949,328	+		SO1857	0.72	+0.3
1,949,364	+		SO1857	0.74	+0.7
1,949,444	+		SO1857	0.78	-1.2
1,949,514	+		SO1857	0.82	-0.7
1,949,744	-				-1.1
1,949,771	+				-0.2
1,949,832	+				+0.4
1,949,933	-				-0.0
1,949,980	-				-0.5
1,950,604	-		SO1858	0.75	+0.4
1,950,663	+		SO1858	0.84	+0.4
1,950,668	+		SO1858	0.85	-0.7
1,950,676	-		SO1858	0.87	+0.3
1,950,695	+		SO1858	0.90	+0.8
1,950,782	-				+0.2
1,950,784	+				+0.9
1,950,784	+				-0.2
1,950,792	-				+0.4