Strain Fitness in Shewanella oneidensis MR-1 around SO1016

Experiment: nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 5 mM
1,051,611	+				-1.4
1,051,677	+				-0.5
1,051,735	-				-1.9
1,051,746	-	nuoH	SO1015	0.10	-0.9
1,051,786	+	nuoH	SO1015	0.14	-0.9
1,051,786	+	nuoH	SO1015	0.14	-1.1
1,051,815	-	nuoH	SO1015	0.17	-0.9
1,051,869	-	nuoH	SO1015	0.23	-0.1
1,051,974	+	nuoH	SO1015	0.34	-0.8
1,051,996	+	nuoH	SO1015	0.36	-1.1
1,052,063	+	nuoH	SO1015	0.43	-2.2
1,052,063	+	nuoH	SO1015	0.43	-1.4
1,052,073	+	nuoH	SO1015	0.44	-0.7
1,052,165	+	nuoH	SO1015	0.54	-0.9
1,052,165	+	nuoH	SO1015	0.54	-1.6
1,052,165	+	nuoH	SO1015	0.54	-0.9
1,052,261	+	nuoH	SO1015	0.63	-1.3
1,052,268	+	nuoH	SO1015	0.64	-1.3
1,052,268	+	nuoH	SO1015	0.64	-2.9
1,052,403	+	nuoH	SO1015	0.78	-0.7
1,052,650	+				+0.4
1,052,774	+				-0.1
1,052,774	+				-0.1
1,052,774	+				+0.2
1,052,774	+				-0.4
1,052,782	-				-1.1
1,052,782	-				-0.7
1,052,782	-				-1.5
1,052,782	-				-1.5
1,052,921	+	nuoG	SO1016	0.11	-0.9
1,052,929	-	nuoG	SO1016	0.12	-1.1
1,052,964	+	nuoG	SO1016	0.13	-0.8
1,053,130	+	nuoG	SO1016	0.19	-1.5
1,053,206	+	nuoG	SO1016	0.22	-1.6
1,053,269	+	nuoG	SO1016	0.24	-0.9
1,053,446	-	nuoG	SO1016	0.31	-0.1
1,053,500	-	nuoG	SO1016	0.33	-1.2
1,053,516	-	nuoG	SO1016	0.33	-1.0
1,053,590	+	nuoG	SO1016	0.36	-2.0
1,053,643	-	nuoG	SO1016	0.38	-1.5
1,053,796	+	nuoG	SO1016	0.43	-0.7
1,053,823	+	nuoG	SO1016	0.44	-1.9
1,053,975	-	nuoG	SO1016	0.50	-0.7
1,054,059	-	nuoG	SO1016	0.53	-0.0
1,054,081	+	nuoG	SO1016	0.54	-1.3
1,054,148	-	nuoG	SO1016	0.56	-0.9
1,054,154	+	nuoG	SO1016	0.57	-0.8
1,054,178	-	nuoG	SO1016	0.57	-1.5
1,054,205	-	nuoG	SO1016	0.58	-0.8
1,054,253	-	nuoG	SO1016	0.60	-0.3
1,054,253	-	nuoG	SO1016	0.60	-0.6
1,054,253	-	nuoG	SO1016	0.60	-0.7
1,054,262	+	nuoG	SO1016	0.60	-1.2
1,054,322	-	nuoG	SO1016	0.63	-1.7
1,054,325	+	nuoG	SO1016	0.63	-0.4
1,054,359	+	nuoG	SO1016	0.64	-1.9
1,054,436	-	nuoG	SO1016	0.67	-0.5
1,054,516	-	nuoG	SO1016	0.70	-0.8
1,054,526	-	nuoG	SO1016	0.70	-1.1
1,054,528	+	nuoG	SO1016	0.70	-1.3
1,054,528	+	nuoG	SO1016	0.70	-0.8
1,054,706	+	nuoG	SO1016	0.77	-0.6
1,054,807	-	nuoG	SO1016	0.80	-2.2
1,054,818	-	nuoG	SO1016	0.81	-1.4
1,054,847	+	nuoG	SO1016	0.82	-1.4
1,055,019	+	nuoG	SO1016	0.88	-0.4
1,055,038	-	nuoG	SO1016	0.89	-0.6
1,055,254	+				-1.4
1,055,275	+				-1.1
1,055,349	+				-2.0
1,055,424	-				-0.1
1,055,509	-				-1.9
1,055,629	+	nuoF	SO1017	0.18	-1.8
1,055,637	-	nuoF	SO1017	0.18	-1.3
1,055,653	+	nuoF	SO1017	0.20	-1.3
1,055,756	-	nuoF	SO1017	0.27	-0.1
1,055,788	+	nuoF	SO1017	0.29	+0.1
1,055,796	-	nuoF	SO1017	0.30	-0.9
1,055,796	-	nuoF	SO1017	0.30	-1.4
1,055,862	-	nuoF	SO1017	0.35	+0.1
1,055,933	-	nuoF	SO1017	0.40	-0.9
1,055,954	-	nuoF	SO1017	0.41	-0.8
1,055,975	+	nuoF	SO1017	0.43	-0.8
1,056,046	-	nuoF	SO1017	0.48	-1.8
1,056,060	-	nuoF	SO1017	0.49	-0.8
1,056,064	+	nuoF	SO1017	0.49	-2.4
1,056,064	+	nuoF	SO1017	0.49	-2.0
1,056,152	+	nuoF	SO1017	0.56	-1.5
1,056,160	+	nuoF	SO1017	0.56	-0.8
1,056,160	-	nuoF	SO1017	0.56	-1.1
1,056,182	-	nuoF	SO1017	0.58	-1.7
1,056,266	-				-0.9
1,056,271	+				-1.1
1,056,271	+				-1.1
1,056,279	-				-0.7
1,056,279	-				-0.3
1,056,299	+				-0.8