Strain Fitness in Shewanella oneidensis MR-1 around SO1014

Experiment: nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 5 mM
1,050,114	+				-0.9
1,050,114	+				-0.8
1,050,122	-				-1.6
1,050,133	+				-0.1
1,050,178	-				-0.7
1,050,183	-				+0.3
1,050,261	-	nuoK	SO1012	0.11	-0.0
1,050,285	-	nuoK	SO1012	0.18	-2.2
1,050,315	-	nuoK	SO1012	0.28	-1.2
1,050,371	-	nuoK	SO1012	0.46	-3.6
1,050,459	+	nuoK	SO1012	0.75	-1.1
1,050,467	-	nuoK	SO1012	0.77	-0.4
1,050,481	+	nuoK	SO1012	0.82	-0.8
1,050,481	+	nuoK	SO1012	0.82	-1.4
1,050,503	+	nuoK	SO1012	0.89	-0.9
1,050,503	+	nuoK	SO1012	0.89	-1.4
1,050,511	-				-1.8
1,050,543	+				-1.2
1,050,587	-				-0.4
1,050,589	+	nuoJ	SO1013	0.10	-1.1
1,050,605	-	nuoJ	SO1013	0.13	-1.1
1,050,696	+	nuoJ	SO1013	0.30	-1.0
1,050,706	+	nuoJ	SO1013	0.31	-0.8
1,050,706	+	nuoJ	SO1013	0.31	-0.5
1,050,714	-	nuoJ	SO1013	0.33	-1.4
1,051,006	+	nuoJ	SO1013	0.86	-0.3
1,051,155	-	nuoI	SO1014	0.11	-1.6
1,051,318	+	nuoI	SO1014	0.41	-0.9
1,051,446	-	nuoI	SO1014	0.65	-1.1
1,051,454	-	nuoI	SO1014	0.66	-2.8
1,051,485	+	nuoI	SO1014	0.72	-1.0
1,051,485	+	nuoI	SO1014	0.72	-0.7
1,051,493	-	nuoI	SO1014	0.73	-1.8
1,051,611	+				-1.4
1,051,677	+				-0.5
1,051,735	-				-1.9
1,051,746	-	nuoH	SO1015	0.10	-0.9
1,051,786	+	nuoH	SO1015	0.14	-0.9
1,051,786	+	nuoH	SO1015	0.14	-1.1
1,051,815	-	nuoH	SO1015	0.17	-0.9
1,051,869	-	nuoH	SO1015	0.23	-0.1
1,051,974	+	nuoH	SO1015	0.34	-0.8
1,051,996	+	nuoH	SO1015	0.36	-1.1
1,052,063	+	nuoH	SO1015	0.43	-2.2
1,052,063	+	nuoH	SO1015	0.43	-1.4
1,052,073	+	nuoH	SO1015	0.44	-0.7
1,052,165	+	nuoH	SO1015	0.54	-0.9
1,052,165	+	nuoH	SO1015	0.54	-1.6
1,052,165	+	nuoH	SO1015	0.54	-0.9
1,052,261	+	nuoH	SO1015	0.63	-1.3
1,052,268	+	nuoH	SO1015	0.64	-1.3
1,052,268	+	nuoH	SO1015	0.64	-2.9
1,052,403	+	nuoH	SO1015	0.78	-0.7