Strain Fitness in Shewanella oneidensis MR-1 around SO1012

Experiment: nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 5 mM
1,049,249	+	nuoL	SO1011	0.47	-0.6
1,049,329	-	nuoL	SO1011	0.51	-1.3
1,049,354	+	nuoL	SO1011	0.52	-1.0
1,049,357	-	nuoL	SO1011	0.53	-3.0
1,049,451	+	nuoL	SO1011	0.58	-1.2
1,049,581	-	nuoL	SO1011	0.65	-1.1
1,049,581	-	nuoL	SO1011	0.65	-1.3
1,049,583	+	nuoL	SO1011	0.65	-1.1
1,049,583	+	nuoL	SO1011	0.65	-0.1
1,049,583	+	nuoL	SO1011	0.65	-0.5
1,049,591	-	nuoL	SO1011	0.65	-1.3
1,049,637	+	nuoL	SO1011	0.68	-1.3
1,049,652	+	nuoL	SO1011	0.69	-0.8
1,049,697	-				-0.4
1,049,725	-	nuoL	SO1011	0.73	-1.4
1,049,725	-	nuoL	SO1011	0.73	-0.4
1,049,748	+	nuoL	SO1011	0.74	-1.2
1,049,774	+	nuoL	SO1011	0.75	-0.8
1,049,792	-	nuoL	SO1011	0.76	-1.7
1,050,114	+				-0.9
1,050,114	+				-0.8
1,050,122	-				-1.6
1,050,133	+				-0.1
1,050,178	-				-0.7
1,050,183	-				+0.3
1,050,261	-	nuoK	SO1012	0.11	-0.0
1,050,285	-	nuoK	SO1012	0.18	-2.2
1,050,315	-	nuoK	SO1012	0.28	-1.2
1,050,371	-	nuoK	SO1012	0.46	-3.6
1,050,459	+	nuoK	SO1012	0.75	-1.1
1,050,467	-	nuoK	SO1012	0.77	-0.4
1,050,481	+	nuoK	SO1012	0.82	-0.8
1,050,481	+	nuoK	SO1012	0.82	-1.4
1,050,503	+	nuoK	SO1012	0.89	-0.9
1,050,503	+	nuoK	SO1012	0.89	-1.4
1,050,511	-				-1.8
1,050,543	+				-1.2
1,050,587	-				-0.4
1,050,589	+	nuoJ	SO1013	0.10	-1.1
1,050,605	-	nuoJ	SO1013	0.13	-1.1
1,050,696	+	nuoJ	SO1013	0.30	-1.0
1,050,706	+	nuoJ	SO1013	0.31	-0.8
1,050,706	+	nuoJ	SO1013	0.31	-0.5
1,050,714	-	nuoJ	SO1013	0.33	-1.4
1,051,006	+	nuoJ	SO1013	0.86	-0.3
1,051,155	-	nuoI	SO1014	0.11	-1.6
1,051,318	+	nuoI	SO1014	0.41	-0.9
1,051,446	-	nuoI	SO1014	0.65	-1.1
1,051,454	-	nuoI	SO1014	0.66	-2.8
1,051,485	+	nuoI	SO1014	0.72	-1.0
1,051,485	+	nuoI	SO1014	0.72	-0.7
1,051,493	-	nuoI	SO1014	0.73	-1.8