Strain Fitness in Shewanella oneidensis MR-1 around SO0931

Experiment: nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttkt and epd are separated by 128 nucleotidesepd and pgk are separated by 133 nucleotides SO0930: tkt - transketolase (NCBI ptt file), at 959,616 to 961,610 tkt SO0931: epd - D-erythrose-4-phosphate dehydrogenase (NCBI ptt file), at 961,739 to 962,755 epd SO0932: pgk - phosphoglycerate kinase (NCBI ptt file), at 962,889 to 964,064 pgk Position (kb) 961 962 963Strain fitness (log2 ratio) -2 -1 0 1at 961.648 kb on - strandat 961.677 kb on + strandat 961.855 kb on + strand, within epdat 961.890 kb on - strand, within epdat 962.138 kb on - strand, within epdat 962.145 kb on - strand, within epdat 962.522 kb on + strand, within epdat 962.566 kb on - strand, within epdat 962.576 kb on - strand, within epdat 962.637 kb on + strand, within epdat 962.641 kb on - strand, within epdat 962.734 kb on + strandat 962.776 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 5 mM
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961,648 - +0.9
961,677 + +0.5
961,855 + epd SO0931 0.11 -0.8
961,890 - epd SO0931 0.15 +0.1
962,138 - epd SO0931 0.39 -1.5
962,145 - epd SO0931 0.40 -0.2
962,522 + epd SO0931 0.77 -2.3
962,566 - epd SO0931 0.81 -0.1
962,576 - epd SO0931 0.82 -0.4
962,637 + epd SO0931 0.88 +0.3
962,641 - epd SO0931 0.89 -1.4
962,734 + +0.9
962,776 + -1.3

Or see this region's nucleotide sequence