Strain Fitness in Shewanella oneidensis MR-1 around SO_3079

Experiment: nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 5 mM
3,197,473	-		SO3078	0.22	-0.3
3,197,506	-		SO3078	0.25	+1.0
3,197,571	-		SO3078	0.30	+0.2
3,197,630	+		SO3078	0.35	-0.5
3,197,650	+		SO3078	0.37	-0.4
3,197,658	-		SO3078	0.38	+0.4
3,197,684	+		SO3078	0.40	+0.8
3,197,698	+		SO3078	0.41	+0.6
3,197,706	-		SO3078	0.42	+0.3
3,197,706	-		SO3078	0.42	+0.5
3,197,736	+		SO3078	0.44	-0.9
3,197,852	+		SO3078	0.54	-0.1
3,197,912	+		SO3078	0.59	+0.2
3,198,085	-		SO3078	0.74	+0.4
3,198,094	-		SO3078	0.75	-0.3
3,198,295	+				-0.0
3,198,297	-				-0.2
3,198,297	-				-1.3
3,198,297	-				-0.4
3,198,385	+				-0.5
3,198,412	+				-0.9
3,198,419	-				+0.7
3,198,429	+				+0.3
3,198,435	+				+0.7
3,198,443	-				+0.0
3,198,494	-				-0.2
3,198,585	+		SO_3079	0.39	-1.3
3,198,673	-		SO_3079	0.67	-0.1
3,198,794	-				-0.1
3,199,005	-		SO3078.2	0.29	-0.4
3,199,188	-		SO3078.2	0.53	-0.5
3,199,230	+		SO3078.2	0.58	-0.1
3,199,273	+		SO3078.2	0.63	-1.2
3,199,422	+		SO3078.2	0.82	-0.5
3,199,454	+		SO3078.2	0.87	-0.8
3,199,501	-				-0.6