Experiment: casaminos
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_468 and HP15_469 are separated by 154 nucleotides HP15_469 and HP15_470 are separated by 235 nucleotides
HP15_468: HP15_468 - arginyl-tRNA synthetase, at 474,446 to 476,131
_468
HP15_469: HP15_469 - Ig domain protein, group 1 domain protein, at 476,286 to 478,148
_469
HP15_470: HP15_470 - primosome assembly protein PriA, at 478,384 to 480,558
_470
Position (kb) 476
477
478
479 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 476.351 kb on - strand at 476.369 kb on - strand at 476.476 kb on + strand, within HP15_469 at 476.594 kb on + strand, within HP15_469 at 476.751 kb on + strand, within HP15_469 at 476.853 kb on + strand, within HP15_469 at 476.921 kb on - strand, within HP15_469 at 476.945 kb on - strand, within HP15_469 at 476.967 kb on + strand, within HP15_469 at 477.076 kb on + strand, within HP15_469 at 477.093 kb on + strand, within HP15_469 at 477.155 kb on + strand, within HP15_469 at 477.263 kb on + strand, within HP15_469 at 477.297 kb on - strand, within HP15_469 at 477.299 kb on + strand, within HP15_469 at 477.356 kb on - strand, within HP15_469 at 477.388 kb on + strand, within HP15_469 at 477.488 kb on - strand, within HP15_469 at 477.636 kb on - strand, within HP15_469 at 477.717 kb on - strand, within HP15_469 at 477.726 kb on + strand, within HP15_469 at 477.726 kb on + strand, within HP15_469 at 477.744 kb on + strand, within HP15_469 at 477.744 kb on + strand, within HP15_469 at 477.947 kb on - strand, within HP15_469 at 477.982 kb on + strand at 478.029 kb on + strand at 478.029 kb on + strand at 478.227 kb on - strand at 478.261 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos remove 476,351 - +0.6 476,369 - +0.1 476,476 + HP15_469 0.10 -1.5 476,594 + HP15_469 0.17 +0.4 476,751 + HP15_469 0.25 -0.1 476,853 + HP15_469 0.30 +0.1 476,921 - HP15_469 0.34 -2.3 476,945 - HP15_469 0.35 -2.0 476,967 + HP15_469 0.37 +0.4 477,076 + HP15_469 0.42 -0.3 477,093 + HP15_469 0.43 -2.0 477,155 + HP15_469 0.47 -0.1 477,263 + HP15_469 0.52 -0.8 477,297 - HP15_469 0.54 -1.5 477,299 + HP15_469 0.54 +0.6 477,356 - HP15_469 0.57 +0.2 477,388 + HP15_469 0.59 -4.0 477,488 - HP15_469 0.65 +0.1 477,636 - HP15_469 0.72 -0.2 477,717 - HP15_469 0.77 -0.1 477,726 + HP15_469 0.77 +1.1 477,726 + HP15_469 0.77 -1.2 477,744 + HP15_469 0.78 +0.1 477,744 + HP15_469 0.78 -0.3 477,947 - HP15_469 0.89 -1.9 477,982 + -1.1 478,029 + -2.0 478,029 + -0.6 478,227 - +0.0 478,261 - +1.1
Or see this region's nucleotide sequence