Experiment: casaminos
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3991 and HP15_3992 overlap by 8 nucleotides HP15_3992 and HP15_3993 overlap by 1 nucleotides HP15_3993 and HP15_3994 overlap by 4 nucleotides HP15_3994 and HP15_3995 are separated by 3 nucleotides HP15_3995 and HP15_3996 are separated by 10 nucleotides
HP15_3991: HP15_3991 - F0F1-ATPase subunit, at 4,223,822 to 4,224,127
_3991
HP15_3992: HP15_3992 - F0F1 ATP synthase subunit A-like protein, at 4,224,120 to 4,224,410
_3992
HP15_3993: HP15_3993 - F0F1 ATP synthase subunit A, at 4,224,410 to 4,225,099
_3993
HP15_3994: HP15_3994 - alternate ATPase, F0 complex, subunit C, at 4,225,096 to 4,225,383
_3994
HP15_3995: HP15_3995 - H(+)-transporting ATP synthase, subunit B, at 4,225,387 to 4,226,154
_3995
HP15_3996: HP15_3996 - F0F1 ATP synthase subunit alpha, at 4,226,165 to 4,227,682
_3996
Position (kb) 4225
4226 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4224.114 kb on + strand at 4224.253 kb on + strand, within HP15_3992 at 4224.255 kb on + strand, within HP15_3992 at 4224.261 kb on - strand, within HP15_3992 at 4224.491 kb on + strand, within HP15_3993 at 4224.567 kb on + strand, within HP15_3993 at 4224.573 kb on + strand, within HP15_3993 at 4224.641 kb on + strand, within HP15_3993 at 4224.641 kb on + strand, within HP15_3993 at 4224.641 kb on - strand, within HP15_3993 at 4224.708 kb on + strand, within HP15_3993 at 4224.741 kb on + strand, within HP15_3993 at 4224.820 kb on + strand, within HP15_3993 at 4224.825 kb on + strand, within HP15_3993 at 4224.825 kb on + strand, within HP15_3993 at 4224.833 kb on - strand, within HP15_3993 at 4224.888 kb on - strand, within HP15_3993 at 4224.890 kb on - strand, within HP15_3993 at 4224.890 kb on - strand, within HP15_3993 at 4224.921 kb on - strand, within HP15_3993 at 4225.043 kb on + strand at 4225.043 kb on + strand at 4225.043 kb on + strand at 4225.131 kb on - strand, within HP15_3994 at 4225.137 kb on - strand, within HP15_3994 at 4225.162 kb on + strand, within HP15_3994 at 4225.238 kb on + strand, within HP15_3994 at 4225.239 kb on - strand, within HP15_3994 at 4225.260 kb on + strand, within HP15_3994 at 4225.371 kb on - strand at 4225.386 kb on - strand at 4225.492 kb on - strand, within HP15_3995 at 4225.604 kb on + strand, within HP15_3995 at 4225.639 kb on + strand, within HP15_3995 at 4225.659 kb on - strand, within HP15_3995 at 4225.669 kb on + strand, within HP15_3995 at 4225.679 kb on + strand, within HP15_3995 at 4225.768 kb on - strand, within HP15_3995 at 4225.781 kb on - strand, within HP15_3995 at 4225.854 kb on + strand, within HP15_3995 at 4225.903 kb on - strand, within HP15_3995 at 4225.930 kb on + strand, within HP15_3995 at 4225.986 kb on - strand, within HP15_3995 at 4225.986 kb on - strand, within HP15_3995 at 4225.998 kb on - strand, within HP15_3995 at 4226.056 kb on - strand, within HP15_3995 at 4226.058 kb on + strand, within HP15_3995 at 4226.066 kb on - strand, within HP15_3995 at 4226.137 kb on + strand at 4226.137 kb on + strand at 4226.255 kb on + strand at 4226.270 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos remove 4,224,114 + +0.5 4,224,253 + HP15_3992 0.46 +0.2 4,224,255 + HP15_3992 0.46 +0.7 4,224,261 - HP15_3992 0.48 -0.4 4,224,491 + HP15_3993 0.12 -0.2 4,224,567 + HP15_3993 0.23 +0.8 4,224,573 + HP15_3993 0.24 -0.2 4,224,641 + HP15_3993 0.33 +0.3 4,224,641 + HP15_3993 0.33 -0.5 4,224,641 - HP15_3993 0.33 +0.5 4,224,708 + HP15_3993 0.43 +0.2 4,224,741 + HP15_3993 0.48 +0.7 4,224,820 + HP15_3993 0.59 +0.2 4,224,825 + HP15_3993 0.60 -0.4 4,224,825 + HP15_3993 0.60 -2.0 4,224,833 - HP15_3993 0.61 -0.3 4,224,888 - HP15_3993 0.69 -0.1 4,224,890 - HP15_3993 0.70 +0.1 4,224,890 - HP15_3993 0.70 -0.5 4,224,921 - HP15_3993 0.74 +1.2 4,225,043 + -0.2 4,225,043 + +0.1 4,225,043 + +0.3 4,225,131 - HP15_3994 0.12 -1.5 4,225,137 - HP15_3994 0.14 -1.2 4,225,162 + HP15_3994 0.23 -0.7 4,225,238 + HP15_3994 0.49 -2.4 4,225,239 - HP15_3994 0.50 -0.4 4,225,260 + HP15_3994 0.57 +0.8 4,225,371 - +0.7 4,225,386 - +0.6 4,225,492 - HP15_3995 0.14 +1.8 4,225,604 + HP15_3995 0.28 +0.2 4,225,639 + HP15_3995 0.33 -0.5 4,225,659 - HP15_3995 0.35 -1.6 4,225,669 + HP15_3995 0.37 -1.2 4,225,679 + HP15_3995 0.38 -0.2 4,225,768 - HP15_3995 0.50 -0.3 4,225,781 - HP15_3995 0.51 -0.2 4,225,854 + HP15_3995 0.61 +1.0 4,225,903 - HP15_3995 0.67 -0.0 4,225,930 + HP15_3995 0.71 -0.5 4,225,986 - HP15_3995 0.78 +1.1 4,225,986 - HP15_3995 0.78 +1.8 4,225,998 - HP15_3995 0.80 +0.1 4,226,056 - HP15_3995 0.87 +1.9 4,226,058 + HP15_3995 0.87 +1.1 4,226,066 - HP15_3995 0.88 +0.1 4,226,137 + +1.4 4,226,137 + -0.2 4,226,255 + +0.4 4,226,270 - -0.1
Or see this region's nucleotide sequence