Strain Fitness in Dechlorosoma suillum PS around Dsui_2649

Experiment: rich media

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2648 and Dsui_2649 are separated by 6 nucleotidesDsui_2649 and Dsui_2650 are separated by 484 nucleotides Dsui_2648: Dsui_2648 - site-specific recombinase XerD, at 2,801,689 to 2,802,972 _2648 Dsui_2649: Dsui_2649 - transposase, TnpA family, at 2,802,979 to 2,805,981 _2649 Dsui_2650: Dsui_2650 - TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component, at 2,806,466 to 2,807,458 _2650 Position (kb) 2802 2803 2804 2805 2806Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2802.028 kb on - strand, within Dsui_2648at 2802.151 kb on - strandat 2802.204 kb on - strand, within Dsui_2648at 2802.260 kb on + strand, within Dsui_2648at 2802.269 kb on + strand, within Dsui_2648at 2802.295 kb on + strand, within Dsui_2648at 2802.305 kb on + strand, within Dsui_2648at 2802.313 kb on - strand, within Dsui_2648at 2802.314 kb on + strand, within Dsui_2648at 2802.428 kb on + strand, within Dsui_2648at 2802.441 kb on - strand, within Dsui_2648at 2802.453 kb on + strand, within Dsui_2648at 2802.499 kb on - strand, within Dsui_2648at 2802.569 kb on + strand, within Dsui_2648at 2802.579 kb on + strand, within Dsui_2648at 2802.587 kb on - strand, within Dsui_2648at 2802.646 kb on + strand, within Dsui_2648at 2802.672 kb on + strand, within Dsui_2648at 2802.720 kb on + strand, within Dsui_2648at 2802.786 kb on + strand, within Dsui_2648at 2802.786 kb on + strand, within Dsui_2648at 2802.794 kb on - strand, within Dsui_2648at 2802.798 kb on + strand, within Dsui_2648at 2802.870 kb on + strandat 2802.870 kb on + strandat 2802.878 kb on - strandat 2802.878 kb on - strandat 2802.878 kb on - strandat 2802.878 kb on - strandat 2802.878 kb on - strandat 2802.938 kb on + strandat 2802.938 kb on + strandat 2803.023 kb on + strandat 2803.047 kb on + strandat 2803.055 kb on - strandat 2803.167 kb on + strandat 2803.167 kb on + strandat 2803.167 kb on + strandat 2803.167 kb on + strandat 2803.175 kb on - strandat 2803.259 kb on + strandat 2803.279 kb on - strandat 2803.309 kb on - strand, within Dsui_2649at 2803.340 kb on + strand, within Dsui_2649at 2803.381 kb on - strand, within Dsui_2649at 2803.438 kb on + strand, within Dsui_2649at 2803.536 kb on + strand, within Dsui_2649at 2803.543 kb on + strand, within Dsui_2649at 2803.592 kb on + strand, within Dsui_2649at 2803.667 kb on + strand, within Dsui_2649at 2803.677 kb on - strand, within Dsui_2649at 2803.726 kb on + strand, within Dsui_2649at 2803.739 kb on - strand, within Dsui_2649at 2803.796 kb on - strandat 2803.903 kb on - strand, within Dsui_2649at 2803.906 kb on + strand, within Dsui_2649at 2803.945 kb on - strand, within Dsui_2649at 2803.999 kb on - strand, within Dsui_2649at 2804.078 kb on - strand, within Dsui_2649at 2804.084 kb on - strand, within Dsui_2649at 2804.109 kb on + strand, within Dsui_2649at 2804.191 kb on + strand, within Dsui_2649at 2804.299 kb on + strand, within Dsui_2649at 2804.341 kb on + strand, within Dsui_2649at 2804.404 kb on + strand, within Dsui_2649at 2804.436 kb on + strand, within Dsui_2649at 2804.574 kb on + strand, within Dsui_2649at 2804.574 kb on - strandat 2804.587 kb on - strand, within Dsui_2649at 2804.587 kb on - strand, within Dsui_2649at 2804.664 kb on - strand, within Dsui_2649at 2804.689 kb on - strand, within Dsui_2649at 2804.700 kb on + strand, within Dsui_2649at 2804.740 kb on + strand, within Dsui_2649at 2804.745 kb on + strand, within Dsui_2649at 2804.753 kb on - strandat 2804.796 kb on - strand, within Dsui_2649at 2804.832 kb on + strand, within Dsui_2649at 2804.866 kb on - strand, within Dsui_2649at 2804.938 kb on - strand, within Dsui_2649at 2805.052 kb on + strand, within Dsui_2649at 2805.216 kb on + strand, within Dsui_2649at 2805.265 kb on + strand, within Dsui_2649at 2805.265 kb on + strand, within Dsui_2649at 2805.265 kb on + strand, within Dsui_2649at 2805.273 kb on - strand, within Dsui_2649at 2805.273 kb on - strand, within Dsui_2649at 2805.273 kb on - strand, within Dsui_2649at 2805.297 kb on + strand, within Dsui_2649at 2805.319 kb on - strand, within Dsui_2649at 2805.323 kb on - strand, within Dsui_2649at 2805.347 kb on - strand, within Dsui_2649at 2805.431 kb on - strandat 2805.507 kb on + strand, within Dsui_2649at 2805.545 kb on + strand, within Dsui_2649at 2805.553 kb on - strand, within Dsui_2649at 2805.558 kb on + strand, within Dsui_2649at 2805.611 kb on - strand, within Dsui_2649at 2805.643 kb on - strand, within Dsui_2649at 2805.649 kb on - strand, within Dsui_2649at 2805.649 kb on - strand, within Dsui_2649at 2805.683 kb on - strandat 2805.792 kb on - strandat 2805.823 kb on + strandat 2805.849 kb on - strandat 2805.866 kb on + strandat 2806.061 kb on - strandat 2806.069 kb on - strandat 2806.071 kb on + strandat 2806.071 kb on + strandat 2806.136 kb on + strandat 2806.144 kb on - strandat 2806.144 kb on - strandat 2806.170 kb on + strandat 2806.200 kb on + strandat 2806.202 kb on - strandat 2806.208 kb on + strandat 2806.209 kb on - strandat 2806.215 kb on + strandat 2806.216 kb on - strandat 2806.222 kb on - strandat 2806.282 kb on - strandat 2806.282 kb on - strandat 2806.292 kb on - strandat 2806.325 kb on + strandat 2806.333 kb on - strandat 2806.368 kb on + strandat 2806.373 kb on + strandat 2806.373 kb on + strandat 2806.376 kb on - strandat 2806.381 kb on - strandat 2806.381 kb on - strandat 2806.383 kb on + strandat 2806.391 kb on - strandat 2806.391 kb on - strandat 2806.391 kb on - strandat 2806.391 kb on - strandat 2806.391 kb on - strandat 2806.398 kb on + strandat 2806.398 kb on + strandat 2806.403 kb on + strandat 2806.403 kb on + strandat 2806.403 kb on + strandat 2806.403 kb on + strandat 2806.411 kb on - strandat 2806.411 kb on - strandat 2806.411 kb on - strandat 2806.458 kb on + strandat 2806.494 kb on - strandat 2806.494 kb on - strandat 2806.517 kb on - strandat 2806.517 kb on - strandat 2806.518 kb on - strandat 2806.598 kb on + strand, within Dsui_2650at 2806.606 kb on - strand, within Dsui_2650at 2806.674 kb on - strand, within Dsui_2650at 2806.735 kb on + strand, within Dsui_2650at 2806.744 kb on + strandat 2806.744 kb on + strandat 2806.752 kb on - strand, within Dsui_2650at 2806.762 kb on + strand, within Dsui_2650at 2806.812 kb on + strand, within Dsui_2650at 2806.889 kb on - strand, within Dsui_2650at 2806.924 kb on + strand, within Dsui_2650at 2806.924 kb on + strand, within Dsui_2650

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction rich media
remove
2,802,028 - Dsui_2648 0.26 -0.5
2,802,151 - +0.3
2,802,204 - Dsui_2648 0.40 +1.5
2,802,260 + Dsui_2648 0.44 +0.0
2,802,269 + Dsui_2648 0.45 +0.5
2,802,295 + Dsui_2648 0.47 -0.4
2,802,305 + Dsui_2648 0.48 +0.1
2,802,313 - Dsui_2648 0.49 +0.8
2,802,314 + Dsui_2648 0.49 +0.0
2,802,428 + Dsui_2648 0.58 -0.0
2,802,441 - Dsui_2648 0.59 -0.3
2,802,453 + Dsui_2648 0.60 -0.1
2,802,499 - Dsui_2648 0.63 -1.1
2,802,569 + Dsui_2648 0.69 +0.2
2,802,579 + Dsui_2648 0.69 +0.0
2,802,587 - Dsui_2648 0.70 -0.1
2,802,646 + Dsui_2648 0.75 +0.4
2,802,672 + Dsui_2648 0.77 -0.5
2,802,720 + Dsui_2648 0.80 +0.1
2,802,786 + Dsui_2648 0.85 +0.6
2,802,786 + Dsui_2648 0.85 +0.0
2,802,794 - Dsui_2648 0.86 -0.3
2,802,798 + Dsui_2648 0.86 +0.2
2,802,870 + -0.9
2,802,870 + +0.5
2,802,878 - +0.5
2,802,878 - -0.5
2,802,878 - -1.7
2,802,878 - -0.2
2,802,878 - -0.5
2,802,938 + +0.3
2,802,938 + +1.0
2,803,023 + -0.0
2,803,047 + -0.6
2,803,055 - -0.8
2,803,167 + +0.6
2,803,167 + +0.4
2,803,167 + +0.6
2,803,167 + +0.2
2,803,175 - +1.1
2,803,259 + -0.3
2,803,279 - -0.3
2,803,309 - Dsui_2649 0.11 -0.9
2,803,340 + Dsui_2649 0.12 +1.1
2,803,381 - Dsui_2649 0.13 -0.2
2,803,438 + Dsui_2649 0.15 +0.4
2,803,536 + Dsui_2649 0.19 -0.6
2,803,543 + Dsui_2649 0.19 +0.1
2,803,592 + Dsui_2649 0.20 +0.2
2,803,667 + Dsui_2649 0.23 -0.1
2,803,677 - Dsui_2649 0.23 -0.5
2,803,726 + Dsui_2649 0.25 -0.3
2,803,739 - Dsui_2649 0.25 -1.1
2,803,796 - +2.1
2,803,903 - Dsui_2649 0.31 -0.0
2,803,906 + Dsui_2649 0.31 -1.2
2,803,945 - Dsui_2649 0.32 +0.1
2,803,999 - Dsui_2649 0.34 +0.8
2,804,078 - Dsui_2649 0.37 -0.3
2,804,084 - Dsui_2649 0.37 +0.3
2,804,109 + Dsui_2649 0.38 -0.8
2,804,191 + Dsui_2649 0.40 -0.3
2,804,299 + Dsui_2649 0.44 -0.6
2,804,341 + Dsui_2649 0.45 -0.1
2,804,404 + Dsui_2649 0.47 -0.0
2,804,436 + Dsui_2649 0.49 -0.1
2,804,574 + Dsui_2649 0.53 -0.0
2,804,574 - +0.7
2,804,587 - Dsui_2649 0.54 -1.0
2,804,587 - Dsui_2649 0.54 -0.5
2,804,664 - Dsui_2649 0.56 +0.1
2,804,689 - Dsui_2649 0.57 +0.7
2,804,700 + Dsui_2649 0.57 -1.6
2,804,740 + Dsui_2649 0.59 -0.3
2,804,745 + Dsui_2649 0.59 +0.3
2,804,753 - -0.2
2,804,796 - Dsui_2649 0.61 -0.3
2,804,832 + Dsui_2649 0.62 -0.2
2,804,866 - Dsui_2649 0.63 -0.9
2,804,938 - Dsui_2649 0.65 +0.2
2,805,052 + Dsui_2649 0.69 +0.1
2,805,216 + Dsui_2649 0.74 -0.9
2,805,265 + Dsui_2649 0.76 -0.1
2,805,265 + Dsui_2649 0.76 -0.6
2,805,265 + Dsui_2649 0.76 +0.0
2,805,273 - Dsui_2649 0.76 -0.8
2,805,273 - Dsui_2649 0.76 -0.1
2,805,273 - Dsui_2649 0.76 -0.1
2,805,297 + Dsui_2649 0.77 -0.1
2,805,319 - Dsui_2649 0.78 +0.1
2,805,323 - Dsui_2649 0.78 -0.3
2,805,347 - Dsui_2649 0.79 -2.4
2,805,431 - -0.5
2,805,507 + Dsui_2649 0.84 +0.2
2,805,545 + Dsui_2649 0.85 +0.0
2,805,553 - Dsui_2649 0.86 -1.0
2,805,558 + Dsui_2649 0.86 +0.6
2,805,611 - Dsui_2649 0.88 +0.5
2,805,643 - Dsui_2649 0.89 -0.9
2,805,649 - Dsui_2649 0.89 -0.7
2,805,649 - Dsui_2649 0.89 +0.8
2,805,683 - +0.4
2,805,792 - +0.8
2,805,823 + -0.3
2,805,849 - +0.0
2,805,866 + +0.7
2,806,061 - -0.1
2,806,069 - -0.1
2,806,071 + -0.4
2,806,071 + -0.7
2,806,136 + -0.1
2,806,144 - +0.0
2,806,144 - +0.2
2,806,170 + -0.2
2,806,200 + -0.1
2,806,202 - +0.2
2,806,208 + +1.7
2,806,209 - +0.0
2,806,215 + -0.9
2,806,216 - +0.4
2,806,222 - +0.4
2,806,282 - -1.1
2,806,282 - -0.4
2,806,292 - -0.0
2,806,325 + -1.3
2,806,333 - -0.3
2,806,368 + +0.0
2,806,373 + -0.0
2,806,373 + +0.0
2,806,376 - -0.2
2,806,381 - -0.3
2,806,381 - +0.0
2,806,383 + +0.7
2,806,391 - -0.4
2,806,391 - -0.3
2,806,391 - -0.1
2,806,391 - -0.1
2,806,391 - +2.5
2,806,398 + -0.0
2,806,398 + -1.2
2,806,403 + +0.4
2,806,403 + +1.1
2,806,403 + +1.5
2,806,403 + -0.0
2,806,411 - +1.0
2,806,411 - -0.1
2,806,411 - -0.2
2,806,458 + -0.3
2,806,494 - -0.1
2,806,494 - -0.3
2,806,517 - +0.2
2,806,517 - +0.1
2,806,518 - +0.5
2,806,598 + Dsui_2650 0.13 +0.5
2,806,606 - Dsui_2650 0.14 -0.6
2,806,674 - Dsui_2650 0.21 -0.1
2,806,735 + Dsui_2650 0.27 -0.2
2,806,744 + +0.1
2,806,744 + +3.1
2,806,752 - Dsui_2650 0.29 -0.4
2,806,762 + Dsui_2650 0.30 +2.5
2,806,812 + Dsui_2650 0.35 -0.8
2,806,889 - Dsui_2650 0.43 +0.3
2,806,924 + Dsui_2650 0.46 +0.5
2,806,924 + Dsui_2650 0.46 -1.5

Or see this region's nucleotide sequence