Strain Fitness in Dechlorosoma suillum PS around Dsui_2625

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2623 and Dsui_2625 are separated by 674 nucleotidesDsui_2625 and Dsui_2626 are separated by 93 nucleotides Dsui_2623: Dsui_2623 - site-specific recombinase XerD, at 2,776,311 to 2,777,489 _2623 Dsui_2625: Dsui_2625 - hypothetical protein, at 2,778,164 to 2,778,934 _2625 Dsui_2626: Dsui_2626 - Plasmid replication region DNA-binding N-term protein, at 2,779,028 to 2,780,104 _2626 Position (kb) 2778 2779Strain fitness (log2 ratio) -2 -1 0 1at 2777.196 kb on + strand, within Dsui_2623at 2777.204 kb on - strand, within Dsui_2623at 2777.209 kb on - strand, within Dsui_2623at 2777.245 kb on + strand, within Dsui_2623at 2777.247 kb on + strand, within Dsui_2623at 2777.331 kb on - strand, within Dsui_2623at 2777.379 kb on + strandat 2777.419 kb on + strandat 2777.425 kb on + strandat 2777.484 kb on - strandat 2777.600 kb on - strandat 2777.632 kb on + strandat 2777.645 kb on + strandat 2777.715 kb on + strandat 2777.715 kb on + strandat 2777.719 kb on - strandat 2777.723 kb on - strandat 2777.725 kb on + strandat 2777.737 kb on + strandat 2777.742 kb on - strandat 2777.763 kb on - strandat 2777.763 kb on - strandat 2777.809 kb on + strandat 2777.809 kb on + strandat 2777.809 kb on + strandat 2777.809 kb on + strandat 2777.809 kb on + strandat 2777.809 kb on + strandat 2777.812 kb on - strandat 2777.817 kb on - strandat 2777.817 kb on - strandat 2777.817 kb on - strandat 2777.819 kb on + strandat 2777.819 kb on + strandat 2777.819 kb on + strandat 2777.856 kb on + strandat 2777.857 kb on - strandat 2777.864 kb on - strandat 2777.864 kb on - strandat 2777.891 kb on - strandat 2777.893 kb on - strandat 2777.911 kb on + strandat 2777.911 kb on + strandat 2777.911 kb on + strandat 2777.911 kb on + strandat 2777.911 kb on + strandat 2777.911 kb on + strandat 2777.911 kb on + strandat 2777.911 kb on + strandat 2777.911 kb on + strandat 2777.916 kb on + strandat 2777.919 kb on - strandat 2777.954 kb on - strandat 2777.965 kb on + strandat 2777.965 kb on + strandat 2778.008 kb on - strandat 2778.009 kb on - strandat 2778.009 kb on - strandat 2778.011 kb on + strandat 2778.011 kb on + strandat 2778.011 kb on + strandat 2778.071 kb on + strandat 2778.079 kb on + strandat 2778.079 kb on + strandat 2778.079 kb on + strandat 2778.086 kb on - strandat 2778.087 kb on - strandat 2778.092 kb on + strandat 2778.130 kb on - strandat 2778.174 kb on - strandat 2778.179 kb on + strandat 2778.184 kb on + strandat 2778.184 kb on + strandat 2778.184 kb on + strandat 2778.192 kb on - strandat 2778.192 kb on - strandat 2778.192 kb on - strandat 2778.192 kb on - strandat 2778.192 kb on - strandat 2778.219 kb on - strandat 2778.242 kb on - strand, within Dsui_2625at 2778.247 kb on + strand, within Dsui_2625at 2778.257 kb on + strand, within Dsui_2625at 2778.265 kb on - strand, within Dsui_2625at 2778.267 kb on + strand, within Dsui_2625at 2778.282 kb on - strand, within Dsui_2625at 2778.329 kb on + strand, within Dsui_2625at 2778.334 kb on - strand, within Dsui_2625at 2778.342 kb on - strand, within Dsui_2625at 2778.343 kb on + strand, within Dsui_2625at 2778.351 kb on - strand, within Dsui_2625at 2778.353 kb on + strand, within Dsui_2625at 2778.356 kb on - strand, within Dsui_2625at 2778.359 kb on + strand, within Dsui_2625at 2778.378 kb on + strand, within Dsui_2625at 2778.378 kb on + strand, within Dsui_2625at 2778.378 kb on + strand, within Dsui_2625at 2778.386 kb on - strand, within Dsui_2625at 2778.386 kb on - strand, within Dsui_2625at 2778.386 kb on - strand, within Dsui_2625at 2778.406 kb on + strand, within Dsui_2625at 2778.406 kb on + strand, within Dsui_2625at 2778.414 kb on - strand, within Dsui_2625at 2778.414 kb on - strand, within Dsui_2625at 2778.414 kb on - strand, within Dsui_2625at 2778.500 kb on + strand, within Dsui_2625at 2778.512 kb on + strand, within Dsui_2625at 2778.520 kb on - strand, within Dsui_2625at 2778.577 kb on - strand, within Dsui_2625at 2778.577 kb on - strand, within Dsui_2625at 2778.577 kb on - strand, within Dsui_2625at 2778.587 kb on - strand, within Dsui_2625at 2778.587 kb on - strand, within Dsui_2625at 2778.602 kb on + strand, within Dsui_2625at 2778.612 kb on - strand, within Dsui_2625at 2778.615 kb on + strand, within Dsui_2625at 2778.615 kb on + strand, within Dsui_2625at 2778.620 kb on + strand, within Dsui_2625at 2778.620 kb on + strand, within Dsui_2625at 2778.620 kb on + strand, within Dsui_2625at 2778.623 kb on - strand, within Dsui_2625at 2778.623 kb on - strand, within Dsui_2625at 2778.627 kb on - strand, within Dsui_2625at 2778.639 kb on + strand, within Dsui_2625at 2778.640 kb on - strand, within Dsui_2625at 2778.646 kb on + strand, within Dsui_2625at 2778.648 kb on - strand, within Dsui_2625at 2778.648 kb on - strand, within Dsui_2625at 2778.654 kb on - strand, within Dsui_2625at 2778.672 kb on + strand, within Dsui_2625at 2778.681 kb on - strand, within Dsui_2625at 2778.699 kb on - strand, within Dsui_2625at 2778.719 kb on - strand, within Dsui_2625at 2778.725 kb on - strand, within Dsui_2625at 2778.730 kb on + strand, within Dsui_2625at 2778.738 kb on - strand, within Dsui_2625at 2778.739 kb on - strand, within Dsui_2625at 2778.758 kb on + strand, within Dsui_2625at 2778.771 kb on + strand, within Dsui_2625at 2778.776 kb on + strand, within Dsui_2625at 2778.779 kb on - strand, within Dsui_2625at 2778.779 kb on - strand, within Dsui_2625at 2778.786 kb on + strand, within Dsui_2625at 2778.794 kb on - strand, within Dsui_2625at 2778.815 kb on + strand, within Dsui_2625at 2778.833 kb on + strand, within Dsui_2625at 2778.858 kb on - strandat 2778.863 kb on + strandat 2778.900 kb on + strandat 2778.940 kb on + strandat 2778.940 kb on + strandat 2778.975 kb on + strandat 2778.994 kb on + strandat 2779.002 kb on - strandat 2779.060 kb on + strandat 2779.073 kb on - strandat 2779.079 kb on - strandat 2779.079 kb on - strandat 2779.081 kb on + strandat 2779.088 kb on + strandat 2779.098 kb on + strandat 2779.103 kb on + strandat 2779.108 kb on + strandat 2779.108 kb on + strandat 2779.108 kb on + strandat 2779.116 kb on - strandat 2779.116 kb on - strandat 2779.163 kb on - strand, within Dsui_2626at 2779.193 kb on + strand, within Dsui_2626at 2779.233 kb on - strand, within Dsui_2626at 2779.255 kb on + strand, within Dsui_2626at 2779.257 kb on - strand, within Dsui_2626at 2779.273 kb on - strand, within Dsui_2626at 2779.273 kb on - strand, within Dsui_2626at 2779.278 kb on - strand, within Dsui_2626at 2779.279 kb on - strand, within Dsui_2626at 2779.332 kb on + strand, within Dsui_2626at 2779.388 kb on - strand, within Dsui_2626at 2779.414 kb on + strand, within Dsui_2626at 2779.457 kb on + strand, within Dsui_2626at 2779.553 kb on - strand, within Dsui_2626at 2779.564 kb on + strandat 2779.607 kb on - strand, within Dsui_2626at 2779.612 kb on - strand, within Dsui_2626at 2779.631 kb on + strand, within Dsui_2626at 2779.664 kb on - strand, within Dsui_2626at 2779.682 kb on - strand, within Dsui_2626at 2779.696 kb on + strand, within Dsui_2626at 2779.704 kb on - strand, within Dsui_2626at 2779.704 kb on - strand, within Dsui_2626at 2779.704 kb on - strand, within Dsui_2626at 2779.704 kb on - strand, within Dsui_2626at 2779.730 kb on + strand, within Dsui_2626at 2779.738 kb on - strand, within Dsui_2626at 2779.752 kb on - strand, within Dsui_2626at 2779.773 kb on + strand, within Dsui_2626at 2779.802 kb on - strand, within Dsui_2626at 2779.818 kb on + strand, within Dsui_2626at 2779.823 kb on + strand, within Dsui_2626at 2779.825 kb on + strand, within Dsui_2626at 2779.842 kb on + strand, within Dsui_2626at 2779.845 kb on - strand, within Dsui_2626at 2779.845 kb on - strand, within Dsui_2626at 2779.845 kb on - strand, within Dsui_2626at 2779.872 kb on + strand, within Dsui_2626at 2779.880 kb on - strand, within Dsui_2626at 2779.880 kb on - strand, within Dsui_2626at 2779.884 kb on - strand, within Dsui_2626at 2779.887 kb on + strand, within Dsui_2626at 2779.894 kb on + strand, within Dsui_2626at 2779.903 kb on - strand, within Dsui_2626at 2779.903 kb on - strand, within Dsui_2626at 2779.914 kb on + strand, within Dsui_2626at 2779.932 kb on - strand, within Dsui_2626

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media
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2,777,196 + Dsui_2623 0.75 -0.3
2,777,204 - Dsui_2623 0.76 +0.0
2,777,209 - Dsui_2623 0.76 -0.6
2,777,245 + Dsui_2623 0.79 -0.6
2,777,247 + Dsui_2623 0.79 -0.4
2,777,331 - Dsui_2623 0.87 -0.2
2,777,379 + -0.3
2,777,419 + -0.5
2,777,425 + -0.6
2,777,484 - +0.5
2,777,600 - -0.4
2,777,632 + -0.2
2,777,645 + -0.6
2,777,715 + -0.4
2,777,715 + -0.7
2,777,719 - -0.5
2,777,723 - +0.2
2,777,725 + -0.6
2,777,737 + -0.3
2,777,742 - -0.5
2,777,763 - -0.6
2,777,763 - -0.4
2,777,809 + -0.5
2,777,809 + -0.3
2,777,809 + -0.3
2,777,809 + -0.6
2,777,809 + -0.1
2,777,809 + -0.5
2,777,812 - -0.5
2,777,817 - -0.2
2,777,817 - -0.3
2,777,817 - -2.0
2,777,819 + -0.5
2,777,819 + -0.1
2,777,819 + -0.3
2,777,856 + -0.5
2,777,857 - -0.5
2,777,864 - -0.2
2,777,864 - -0.2
2,777,891 - -0.2
2,777,893 - -0.3
2,777,911 + -0.1
2,777,911 + -1.1
2,777,911 + -0.4
2,777,911 + -0.3
2,777,911 + -0.4
2,777,911 + -1.0
2,777,911 + -0.4
2,777,911 + -0.2
2,777,911 + +0.0
2,777,916 + -0.3
2,777,919 - -0.7
2,777,954 - -0.3
2,777,965 + -0.2
2,777,965 + -1.6
2,778,008 - -0.7
2,778,009 - -0.1
2,778,009 - -0.4
2,778,011 + +0.5
2,778,011 + -0.6
2,778,011 + -0.2
2,778,071 + -0.9
2,778,079 + -0.5
2,778,079 + -0.4
2,778,079 + -0.6
2,778,086 - -0.5
2,778,087 - -0.3
2,778,092 + -0.1
2,778,130 - -0.3
2,778,174 - -0.6
2,778,179 + -1.2
2,778,184 + -0.7
2,778,184 + -0.2
2,778,184 + -0.2
2,778,192 - -0.4
2,778,192 - -0.4
2,778,192 - -0.1
2,778,192 - -0.4
2,778,192 - -0.4
2,778,219 - -0.9
2,778,242 - Dsui_2625 0.10 -0.3
2,778,247 + Dsui_2625 0.11 -0.9
2,778,257 + Dsui_2625 0.12 +0.4
2,778,265 - Dsui_2625 0.13 -0.2
2,778,267 + Dsui_2625 0.13 -0.5
2,778,282 - Dsui_2625 0.15 -0.4
2,778,329 + Dsui_2625 0.21 -0.5
2,778,334 - Dsui_2625 0.22 -0.6
2,778,342 - Dsui_2625 0.23 -0.5
2,778,343 + Dsui_2625 0.23 -1.1
2,778,351 - Dsui_2625 0.24 -0.3
2,778,353 + Dsui_2625 0.25 -0.8
2,778,356 - Dsui_2625 0.25 -0.4
2,778,359 + Dsui_2625 0.25 -0.8
2,778,378 + Dsui_2625 0.28 +0.2
2,778,378 + Dsui_2625 0.28 +0.2
2,778,378 + Dsui_2625 0.28 -1.2
2,778,386 - Dsui_2625 0.29 -0.4
2,778,386 - Dsui_2625 0.29 -0.3
2,778,386 - Dsui_2625 0.29 -0.5
2,778,406 + Dsui_2625 0.31 +0.9
2,778,406 + Dsui_2625 0.31 -0.6
2,778,414 - Dsui_2625 0.32 -0.6
2,778,414 - Dsui_2625 0.32 -0.4
2,778,414 - Dsui_2625 0.32 -0.4
2,778,500 + Dsui_2625 0.44 -1.5
2,778,512 + Dsui_2625 0.45 +0.3
2,778,520 - Dsui_2625 0.46 -0.6
2,778,577 - Dsui_2625 0.54 -0.5
2,778,577 - Dsui_2625 0.54 -0.4
2,778,577 - Dsui_2625 0.54 -0.6
2,778,587 - Dsui_2625 0.55 -0.3
2,778,587 - Dsui_2625 0.55 -0.2
2,778,602 + Dsui_2625 0.57 -0.8
2,778,612 - Dsui_2625 0.58 -0.2
2,778,615 + Dsui_2625 0.58 -0.5
2,778,615 + Dsui_2625 0.58 -0.4
2,778,620 + Dsui_2625 0.59 -2.1
2,778,620 + Dsui_2625 0.59 -0.3
2,778,620 + Dsui_2625 0.59 +0.4
2,778,623 - Dsui_2625 0.60 -0.4
2,778,623 - Dsui_2625 0.60 -0.4
2,778,627 - Dsui_2625 0.60 -0.4
2,778,639 + Dsui_2625 0.62 -1.5
2,778,640 - Dsui_2625 0.62 -0.0
2,778,646 + Dsui_2625 0.63 -1.6
2,778,648 - Dsui_2625 0.63 -0.4
2,778,648 - Dsui_2625 0.63 -0.3
2,778,654 - Dsui_2625 0.64 -0.6
2,778,672 + Dsui_2625 0.66 -1.0
2,778,681 - Dsui_2625 0.67 -0.4
2,778,699 - Dsui_2625 0.69 -0.1
2,778,719 - Dsui_2625 0.72 -0.3
2,778,725 - Dsui_2625 0.73 -0.5
2,778,730 + Dsui_2625 0.73 -1.0
2,778,738 - Dsui_2625 0.74 -0.5
2,778,739 - Dsui_2625 0.75 +0.0
2,778,758 + Dsui_2625 0.77 -0.4
2,778,771 + Dsui_2625 0.79 -0.6
2,778,776 + Dsui_2625 0.79 -0.4
2,778,779 - Dsui_2625 0.80 -0.1
2,778,779 - Dsui_2625 0.80 -0.4
2,778,786 + Dsui_2625 0.81 -0.2
2,778,794 - Dsui_2625 0.82 -0.2
2,778,815 + Dsui_2625 0.84 -0.3
2,778,833 + Dsui_2625 0.87 -0.4
2,778,858 - -0.2
2,778,863 + -0.2
2,778,900 + +0.2
2,778,940 + -0.3
2,778,940 + -0.6
2,778,975 + -1.0
2,778,994 + -0.7
2,779,002 - -0.3
2,779,060 + -0.5
2,779,073 - -0.8
2,779,079 - -0.4
2,779,079 - -0.3
2,779,081 + -0.9
2,779,088 + -0.4
2,779,098 + -0.3
2,779,103 + -0.2
2,779,108 + -0.2
2,779,108 + -0.6
2,779,108 + -2.7
2,779,116 - -0.1
2,779,116 - -0.4
2,779,163 - Dsui_2626 0.13 -0.6
2,779,193 + Dsui_2626 0.15 -0.1
2,779,233 - Dsui_2626 0.19 -0.4
2,779,255 + Dsui_2626 0.21 -0.5
2,779,257 - Dsui_2626 0.21 -0.2
2,779,273 - Dsui_2626 0.23 -0.3
2,779,273 - Dsui_2626 0.23 -0.4
2,779,278 - Dsui_2626 0.23 -0.4
2,779,279 - Dsui_2626 0.23 -0.2
2,779,332 + Dsui_2626 0.28 -2.0
2,779,388 - Dsui_2626 0.33 -0.1
2,779,414 + Dsui_2626 0.36 -0.1
2,779,457 + Dsui_2626 0.40 -0.6
2,779,553 - Dsui_2626 0.49 -0.3
2,779,564 + +0.5
2,779,607 - Dsui_2626 0.54 -1.1
2,779,612 - Dsui_2626 0.54 -0.2
2,779,631 + Dsui_2626 0.56 -0.9
2,779,664 - Dsui_2626 0.59 -0.2
2,779,682 - Dsui_2626 0.61 -0.4
2,779,696 + Dsui_2626 0.62 +0.5
2,779,704 - Dsui_2626 0.63 -0.4
2,779,704 - Dsui_2626 0.63 -0.5
2,779,704 - Dsui_2626 0.63 -0.4
2,779,704 - Dsui_2626 0.63 -0.5
2,779,730 + Dsui_2626 0.65 -1.5
2,779,738 - Dsui_2626 0.66 -0.4
2,779,752 - Dsui_2626 0.67 -0.4
2,779,773 + Dsui_2626 0.69 -0.7
2,779,802 - Dsui_2626 0.72 -0.4
2,779,818 + Dsui_2626 0.73 +0.2
2,779,823 + Dsui_2626 0.74 -1.2
2,779,825 + Dsui_2626 0.74 -0.2
2,779,842 + Dsui_2626 0.76 -0.2
2,779,845 - Dsui_2626 0.76 -0.7
2,779,845 - Dsui_2626 0.76 -0.5
2,779,845 - Dsui_2626 0.76 -0.2
2,779,872 + Dsui_2626 0.78 +0.5
2,779,880 - Dsui_2626 0.79 -0.4
2,779,880 - Dsui_2626 0.79 -0.4
2,779,884 - Dsui_2626 0.79 -0.6
2,779,887 + Dsui_2626 0.80 -1.5
2,779,894 + Dsui_2626 0.80 -1.1
2,779,903 - Dsui_2626 0.81 -0.3
2,779,903 - Dsui_2626 0.81 -0.4
2,779,914 + Dsui_2626 0.82 +0.2
2,779,932 - Dsui_2626 0.84 -0.5

Or see this region's nucleotide sequence