Strain Fitness in Dechlorosoma suillum PS around Dsui_1817

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1815 and Dsui_1816 are separated by 108 nucleotidesDsui_1816 and Dsui_1817 are separated by 222 nucleotidesDsui_1817 and Dsui_1818 are separated by 31 nucleotides Dsui_1815: Dsui_1815 - glutathione S-transferase, at 1,912,431 to 1,913,027 _1815 Dsui_1816: Dsui_1816 - stringent starvation protein B, at 1,913,136 to 1,913,555 _1816 Dsui_1817: Dsui_1817 - anaerobic dehydrogenase, typically selenocysteine-containing, at 1,913,778 to 1,916,543 _1817 Dsui_1818: Dsui_1818 - anthranilate phosphoribosyltransferase, at 1,916,575 to 1,917,558 _1818 Position (kb) 1913 1914 1915 1916 1917Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1913.108 kb on + strandat 1913.155 kb on + strandat 1913.156 kb on + strandat 1913.164 kb on - strandat 1913.208 kb on - strand, within Dsui_1816at 1913.208 kb on - strand, within Dsui_1816at 1913.465 kb on - strand, within Dsui_1816at 1913.527 kb on + strandat 1913.657 kb on - strandat 1913.683 kb on + strandat 1913.769 kb on + strandat 1913.806 kb on + strandat 1913.814 kb on - strandat 1913.814 kb on - strandat 1913.814 kb on - strandat 1913.814 kb on - strandat 1913.853 kb on + strandat 1913.929 kb on + strandat 1914.040 kb on + strandat 1914.048 kb on - strandat 1914.053 kb on - strandat 1914.058 kb on - strandat 1914.300 kb on + strand, within Dsui_1817at 1914.301 kb on + strandat 1914.362 kb on + strand, within Dsui_1817at 1914.385 kb on + strandat 1914.445 kb on + strand, within Dsui_1817at 1914.551 kb on + strand, within Dsui_1817at 1914.596 kb on - strandat 1914.649 kb on - strand, within Dsui_1817at 1914.668 kb on + strandat 1914.700 kb on + strand, within Dsui_1817at 1914.700 kb on + strand, within Dsui_1817at 1914.708 kb on - strandat 1914.812 kb on + strandat 1914.820 kb on - strand, within Dsui_1817at 1914.820 kb on - strandat 1914.873 kb on + strandat 1914.885 kb on + strandat 1914.896 kb on + strandat 1914.919 kb on - strandat 1914.963 kb on - strandat 1914.965 kb on + strandat 1914.997 kb on - strandat 1914.997 kb on - strand, within Dsui_1817at 1915.004 kb on - strandat 1915.023 kb on + strand, within Dsui_1817at 1915.031 kb on - strand, within Dsui_1817at 1915.103 kb on - strand, within Dsui_1817at 1915.363 kb on + strandat 1915.397 kb on + strandat 1915.400 kb on - strandat 1915.407 kb on - strandat 1915.418 kb on + strand, within Dsui_1817at 1915.665 kb on + strandat 1915.689 kb on - strandat 1915.755 kb on - strandat 1915.856 kb on - strandat 1915.931 kb on + strandat 1915.934 kb on - strandat 1915.987 kb on + strandat 1916.078 kb on + strand, within Dsui_1817at 1916.112 kb on + strand, within Dsui_1817at 1916.277 kb on - strandat 1916.376 kb on - strandat 1916.384 kb on - strandat 1916.397 kb on + strandat 1916.474 kb on + strandat 1916.536 kb on - strandat 1916.591 kb on + strandat 1916.629 kb on + strandat 1916.636 kb on + strandat 1916.732 kb on - strand, within Dsui_1818at 1916.800 kb on + strand, within Dsui_1818at 1916.914 kb on + strand, within Dsui_1818at 1917.059 kb on + strand, within Dsui_1818at 1917.059 kb on + strand, within Dsui_1818at 1917.067 kb on - strand, within Dsui_1818at 1917.094 kb on + strand, within Dsui_1818at 1917.152 kb on - strandat 1917.152 kb on - strand, within Dsui_1818at 1917.191 kb on + strand, within Dsui_1818at 1917.199 kb on - strandat 1917.386 kb on + strand, within Dsui_1818at 1917.398 kb on + strand, within Dsui_1818at 1917.418 kb on + strand, within Dsui_1818at 1917.418 kb on + strandat 1917.510 kb on + strandat 1917.518 kb on - strandat 1917.518 kb on - strandat 1917.536 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media
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1,913,108 + -0.7
1,913,155 + -0.1
1,913,156 + +0.1
1,913,164 - +0.1
1,913,208 - Dsui_1816 0.17 +0.3
1,913,208 - Dsui_1816 0.17 +0.6
1,913,465 - Dsui_1816 0.78 +0.2
1,913,527 + -0.4
1,913,657 - -0.2
1,913,683 + +0.2
1,913,769 + -0.2
1,913,806 + +0.2
1,913,814 - +1.0
1,913,814 - +1.2
1,913,814 - -0.5
1,913,814 - -0.4
1,913,853 + +1.5
1,913,929 + +0.5
1,914,040 + +0.4
1,914,048 - +0.4
1,914,053 - +1.0
1,914,058 - +0.4
1,914,300 + Dsui_1817 0.19 +1.6
1,914,301 + +2.0
1,914,362 + Dsui_1817 0.21 +0.5
1,914,385 + +1.4
1,914,445 + Dsui_1817 0.24 -0.8
1,914,551 + Dsui_1817 0.28 +0.5
1,914,596 - +4.0
1,914,649 - Dsui_1817 0.31 +0.4
1,914,668 + +0.4
1,914,700 + Dsui_1817 0.33 -0.9
1,914,700 + Dsui_1817 0.33 +0.0
1,914,708 - +1.0
1,914,812 + -0.0
1,914,820 - Dsui_1817 0.38 +0.8
1,914,820 - -0.4
1,914,873 + +3.0
1,914,885 + -0.0
1,914,896 + +2.0
1,914,919 - +2.0
1,914,963 - +2.0
1,914,965 + +0.6
1,914,997 - +0.4
1,914,997 - Dsui_1817 0.44 -0.2
1,915,004 - +3.6
1,915,023 + Dsui_1817 0.45 -1.0
1,915,031 - Dsui_1817 0.45 -0.1
1,915,103 - Dsui_1817 0.48 +0.6
1,915,363 + +1.2
1,915,397 + +1.4
1,915,400 - +2.0
1,915,407 - +0.4
1,915,418 + Dsui_1817 0.59 +2.0
1,915,665 + +3.0
1,915,689 - +1.0
1,915,755 - +2.0
1,915,856 - +2.0
1,915,931 + +2.0
1,915,934 - +0.4
1,915,987 + +1.6
1,916,078 + Dsui_1817 0.83 +1.2
1,916,112 + Dsui_1817 0.84 -0.7
1,916,277 - +0.2
1,916,376 - -0.4
1,916,384 - +1.4
1,916,397 + +0.6
1,916,474 + +0.1
1,916,536 - +1.0
1,916,591 + +0.6
1,916,629 + -0.9
1,916,636 + +1.8
1,916,732 - Dsui_1818 0.16 +0.6
1,916,800 + Dsui_1818 0.23 -1.3
1,916,914 + Dsui_1818 0.34 -1.8
1,917,059 + Dsui_1818 0.49 -1.1
1,917,059 + Dsui_1818 0.49 -0.3
1,917,067 - Dsui_1818 0.50 -1.2
1,917,094 + Dsui_1818 0.53 -1.1
1,917,152 - +2.0
1,917,152 - Dsui_1818 0.59 -0.3
1,917,191 + Dsui_1818 0.63 +0.4
1,917,199 - +1.0
1,917,386 + Dsui_1818 0.82 -0.4
1,917,398 + Dsui_1818 0.84 +1.2
1,917,418 + Dsui_1818 0.86 -0.4
1,917,418 + -0.0
1,917,510 + +0.6
1,917,518 - +2.0
1,917,518 - +2.6
1,917,536 + +0.8

Or see this region's nucleotide sequence