Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1769 and Dsui_1770 are separated by 23 nucleotides Dsui_1770 and Dsui_1771 are separated by 20 nucleotides Dsui_1771 and Dsui_1772 overlap by 4 nucleotides
Dsui_1769: Dsui_1769 - putative PLP-dependent enzyme possibly involved in cell wall biogenesis, at 1,855,081 to 1,856,211
_1769
Dsui_1770: Dsui_1770 - hypothetical protein, at 1,856,235 to 1,857,332
_1770
Dsui_1771: Dsui_1771 - hypothetical protein, at 1,857,353 to 1,858,123
_1771
Dsui_1772: Dsui_1772 - type I secretion system ABC transporter, PrtD family, at 1,858,120 to 1,859,859
_1772
Position (kb)
1856
1857
1858 Strain fitness (log2 ratio)
-2
-1
0
1 at 1855.238 kb on + strand, within Dsui_1769 at 1855.238 kb on + strand, within Dsui_1769 at 1855.243 kb on + strand, within Dsui_1769 at 1855.243 kb on + strand, within Dsui_1769 at 1855.243 kb on + strand, within Dsui_1769 at 1855.246 kb on - strand, within Dsui_1769 at 1855.246 kb on - strand, within Dsui_1769 at 1855.383 kb on + strand, within Dsui_1769 at 1855.739 kb on + strand, within Dsui_1769 at 1855.786 kb on + strand, within Dsui_1769 at 1855.797 kb on + strand, within Dsui_1769 at 1855.820 kb on + strand, within Dsui_1769 at 1855.828 kb on - strand, within Dsui_1769 at 1855.926 kb on + strand, within Dsui_1769 at 1855.934 kb on - strand, within Dsui_1769 at 1856.114 kb on - strand at 1856.121 kb on - strand at 1856.158 kb on + strand at 1856.163 kb on + strand at 1856.285 kb on + strand at 1856.285 kb on + strand at 1856.285 kb on + strand at 1856.328 kb on + strand at 1856.336 kb on - strand at 1856.347 kb on - strand, within Dsui_1770 at 1856.406 kb on - strand, within Dsui_1770 at 1856.459 kb on - strand, within Dsui_1770 at 1856.527 kb on - strand, within Dsui_1770 at 1856.594 kb on + strand, within Dsui_1770 at 1856.765 kb on - strand, within Dsui_1770 at 1856.799 kb on + strand, within Dsui_1770 at 1856.901 kb on - strand, within Dsui_1770 at 1856.939 kb on - strand, within Dsui_1770 at 1856.969 kb on + strand, within Dsui_1770 at 1856.980 kb on + strand, within Dsui_1770 at 1856.993 kb on - strand, within Dsui_1770 at 1857.043 kb on - strand, within Dsui_1770 at 1857.080 kb on - strand, within Dsui_1770 at 1857.083 kb on + strand, within Dsui_1770 at 1857.091 kb on - strand, within Dsui_1770 at 1857.147 kb on - strand, within Dsui_1770 at 1857.147 kb on - strand, within Dsui_1770 at 1857.188 kb on + strand, within Dsui_1770 at 1857.276 kb on + strand at 1857.313 kb on + strand at 1857.363 kb on - strand at 1857.410 kb on - strand at 1857.410 kb on - strand at 1857.410 kb on - strand at 1857.410 kb on - strand at 1857.420 kb on - strand at 1857.460 kb on + strand, within Dsui_1771 at 1857.578 kb on + strand, within Dsui_1771 at 1857.580 kb on + strand, within Dsui_1771 at 1857.680 kb on + strand, within Dsui_1771 at 1857.701 kb on + strand, within Dsui_1771 at 1857.981 kb on - strand, within Dsui_1771 at 1858.011 kb on - strand, within Dsui_1771 at 1858.089 kb on + strand at 1858.094 kb on + strand at 1858.107 kb on - strand at 1858.142 kb on + strand at 1858.142 kb on + strand at 1858.263 kb on - strand at 1858.263 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 1,855,238 + Dsui_1769 0.14 -0.4 1,855,238 + Dsui_1769 0.14 -0.4 1,855,243 + Dsui_1769 0.14 -0.7 1,855,243 + Dsui_1769 0.14 -0.8 1,855,243 + Dsui_1769 0.14 -0.4 1,855,246 - Dsui_1769 0.15 -0.6 1,855,246 - Dsui_1769 0.15 -1.1 1,855,383 + Dsui_1769 0.27 -0.1 1,855,739 + Dsui_1769 0.58 -0.4 1,855,786 + Dsui_1769 0.62 -0.2 1,855,797 + Dsui_1769 0.63 -0.4 1,855,820 + Dsui_1769 0.65 -0.0 1,855,828 - Dsui_1769 0.66 +0.2 1,855,926 + Dsui_1769 0.75 -0.3 1,855,934 - Dsui_1769 0.75 -0.8 1,856,114 - -1.2 1,856,121 - -2.0 1,856,158 + -0.4 1,856,163 + -0.5 1,856,285 + -0.6 1,856,285 + -0.6 1,856,285 + -0.4 1,856,328 + -0.7 1,856,336 - -0.4 1,856,347 - Dsui_1770 0.10 -2.0 1,856,406 - Dsui_1770 0.16 -1.2 1,856,459 - Dsui_1770 0.20 +0.5 1,856,527 - Dsui_1770 0.27 -0.2 1,856,594 + Dsui_1770 0.33 -0.2 1,856,765 - Dsui_1770 0.48 -0.5 1,856,799 + Dsui_1770 0.51 -0.3 1,856,901 - Dsui_1770 0.61 -0.4 1,856,939 - Dsui_1770 0.64 -0.5 1,856,969 + Dsui_1770 0.67 -0.2 1,856,980 + Dsui_1770 0.68 -1.0 1,856,993 - Dsui_1770 0.69 +0.2 1,857,043 - Dsui_1770 0.74 -0.6 1,857,080 - Dsui_1770 0.77 +0.5 1,857,083 + Dsui_1770 0.77 -0.2 1,857,091 - Dsui_1770 0.78 -1.2 1,857,147 - Dsui_1770 0.83 +0.9 1,857,147 - Dsui_1770 0.83 -0.2 1,857,188 + Dsui_1770 0.87 -0.3 1,857,276 + -0.8 1,857,313 + -0.3 1,857,363 - -0.7 1,857,410 - -1.3 1,857,410 - +0.6 1,857,410 - -0.3 1,857,410 - -0.4 1,857,420 - +0.1 1,857,460 + Dsui_1771 0.14 -0.6 1,857,578 + Dsui_1771 0.29 -0.4 1,857,580 + Dsui_1771 0.29 -0.7 1,857,680 + Dsui_1771 0.42 -0.2 1,857,701 + Dsui_1771 0.45 -0.4 1,857,981 - Dsui_1771 0.81 +0.5 1,858,011 - Dsui_1771 0.85 -2.1 1,858,089 + -0.3 1,858,094 + -1.6 1,858,107 - -0.4 1,858,142 + -0.2 1,858,142 + -0.2 1,858,263 - -0.1 1,858,263 - -0.2
Or see this region's nucleotide sequence