Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0331 and Dsui_0332 are separated by 94 nucleotides Dsui_0332 and Dsui_0333 are separated by 28 nucleotides Dsui_0333 and Dsui_0334 are separated by 37 nucleotides Dsui_0334 and Dsui_0335 are separated by 10 nucleotides
Dsui_0331: Dsui_0331 - PAS domain S-box, at 340,050 to 341,588
_0331
Dsui_0332: Dsui_0332 - ribosomal protein L17, at 341,683 to 342,081
_0332
Dsui_0333: Dsui_0333 - DNA-directed RNA polymerase, alpha subunit, at 342,110 to 343,084
_0333
Dsui_0334: Dsui_0334 - ribosomal protein S4, bacterial/organelle type, at 343,122 to 343,751
_0334
Dsui_0335: Dsui_0335 - 30S ribosomal protein S11, at 343,762 to 344,151
_0335
Position (kb) 342
343
344 Strain fitness (log2 ratio) -1
0
1 at 341.221 kb on - strand, within Dsui_0331 at 341.240 kb on + strand, within Dsui_0331 at 341.240 kb on + strand, within Dsui_0331 at 341.243 kb on - strand, within Dsui_0331 at 341.246 kb on + strand, within Dsui_0331 at 341.248 kb on - strand, within Dsui_0331 at 341.333 kb on + strand, within Dsui_0331 at 341.341 kb on - strand, within Dsui_0331 at 341.358 kb on + strand, within Dsui_0331 at 341.361 kb on + strand, within Dsui_0331 at 341.368 kb on - strand, within Dsui_0331 at 341.375 kb on + strand, within Dsui_0331 at 341.375 kb on + strand, within Dsui_0331 at 341.380 kb on + strand, within Dsui_0331 at 341.382 kb on + strand, within Dsui_0331 at 341.383 kb on - strand, within Dsui_0331 at 341.388 kb on - strand, within Dsui_0331 at 341.388 kb on - strand, within Dsui_0331 at 341.413 kb on + strand, within Dsui_0331 at 341.421 kb on - strand, within Dsui_0331 at 341.432 kb on + strand, within Dsui_0331 at 341.488 kb on + strand at 341.521 kb on - strand at 341.540 kb on - strand at 341.545 kb on + strand at 341.553 kb on - strand at 341.553 kb on - strand at 341.553 kb on - strand at 341.688 kb on - strand at 341.688 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 341,221 - Dsui_0331 0.76 +1.1 341,240 + Dsui_0331 0.77 -0.1 341,240 + Dsui_0331 0.77 +0.1 341,243 - Dsui_0331 0.78 -0.1 341,246 + Dsui_0331 0.78 -0.3 341,248 - Dsui_0331 0.78 -0.3 341,333 + Dsui_0331 0.83 -0.3 341,341 - Dsui_0331 0.84 +0.3 341,358 + Dsui_0331 0.85 -0.1 341,361 + Dsui_0331 0.85 -0.3 341,368 - Dsui_0331 0.86 -0.3 341,375 + Dsui_0331 0.86 -0.1 341,375 + Dsui_0331 0.86 -0.4 341,380 + Dsui_0331 0.86 -0.4 341,382 + Dsui_0331 0.87 -0.2 341,383 - Dsui_0331 0.87 +0.4 341,388 - Dsui_0331 0.87 +0.1 341,388 - Dsui_0331 0.87 -0.2 341,413 + Dsui_0331 0.89 +0.1 341,421 - Dsui_0331 0.89 -0.4 341,432 + Dsui_0331 0.90 -0.4 341,488 + -0.1 341,521 - -0.1 341,540 - -0.1 341,545 + +0.7 341,553 - +0.5 341,553 - +0.0 341,553 - -1.2 341,688 - -0.5 341,688 - +0.1
Or see this region's nucleotide sequence