Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3044

Experiment: MoYLS4 with Carbenicillin 0.0468 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3043 and DvMF_3044 are separated by 285 nucleotidesDvMF_3044 and DvMF_3045 are separated by 214 nucleotides DvMF_3043: DvMF_3043 - protein of unknown function DUF6 transmembrane (RefSeq), at 3,840,003 to 3,840,974 _3043 DvMF_3044: DvMF_3044 - hypothetical protein (RefSeq), at 3,841,260 to 3,842,492 _3044 DvMF_3045: DvMF_3045 - hypothetical protein (RefSeq), at 3,842,707 to 3,843,156 _3045 Position (kb) 3841 3842 3843Strain fitness (log2 ratio) -3 -2 -1 0 1at 3840.436 kb on - strand, within DvMF_3043at 3840.673 kb on + strand, within DvMF_3043at 3840.698 kb on - strand, within DvMF_3043at 3841.121 kb on - strandat 3841.217 kb on - strandat 3841.217 kb on - strandat 3841.462 kb on + strand, within DvMF_3044at 3841.527 kb on - strand, within DvMF_3044at 3841.626 kb on + strand, within DvMF_3044at 3841.722 kb on + strand, within DvMF_3044at 3842.357 kb on + strand, within DvMF_3044at 3842.376 kb on + strandat 3842.436 kb on + strandat 3842.757 kb on + strand, within DvMF_3045at 3842.791 kb on + strand, within DvMF_3045at 3842.908 kb on - strand, within DvMF_3045at 3843.026 kb on - strand, within DvMF_3045at 3843.186 kb on - strandat 3843.186 kb on - strandat 3843.298 kb on - strandat 3843.365 kb on + strandat 3843.380 kb on + strandat 3843.380 kb on + strandat 3843.395 kb on + strandat 3843.398 kb on - strandat 3843.423 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0468 mg/ml
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3,840,436 - DvMF_3043 0.45 -0.2
3,840,673 + DvMF_3043 0.69 +0.1
3,840,698 - DvMF_3043 0.72 -0.1
3,841,121 - -1.1
3,841,217 - -2.0
3,841,217 - -1.5
3,841,462 + DvMF_3044 0.16 -2.7
3,841,527 - DvMF_3044 0.22 -2.1
3,841,626 + DvMF_3044 0.30 -3.1
3,841,722 + DvMF_3044 0.37 -2.1
3,842,357 + DvMF_3044 0.89 -1.8
3,842,376 + -2.7
3,842,436 + -3.3
3,842,757 + DvMF_3045 0.11 -1.0
3,842,791 + DvMF_3045 0.19 -2.1
3,842,908 - DvMF_3045 0.45 -0.7
3,843,026 - DvMF_3045 0.71 -0.5
3,843,186 - -0.5
3,843,186 - +0.0
3,843,298 - -0.3
3,843,365 + -0.8
3,843,380 + -0.3
3,843,380 + -0.6
3,843,395 + -0.2
3,843,398 - -0.8
3,843,423 - +0.1

Or see this region's nucleotide sequence