Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3042

Experiment: MoYLS4 with Carbenicillin 0.0468 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3040 and DvMF_3041 overlap by 4 nucleotidesDvMF_3041 and DvMF_3042 are separated by 104 nucleotidesDvMF_3042 and DvMF_3043 are separated by 94 nucleotides DvMF_3040: DvMF_3040 - coenzyme A binding protein (RefSeq), at 3,837,889 to 3,838,311 _3040 DvMF_3041: DvMF_3041 - protein of unknown function UPF0153 (RefSeq), at 3,838,308 to 3,838,835 _3041 DvMF_3042: DvMF_3042 - heat shock protein DnaJ domain protein (RefSeq), at 3,838,940 to 3,839,908 _3042 DvMF_3043: DvMF_3043 - protein of unknown function DUF6 transmembrane (RefSeq), at 3,840,003 to 3,840,974 _3043 Position (kb) 3838 3839 3840Strain fitness (log2 ratio) -1 0 1 2at 3837.943 kb on - strandat 3838.586 kb on + strand, within DvMF_3041at 3838.594 kb on - strand, within DvMF_3041at 3839.067 kb on - strand, within DvMF_3042at 3839.307 kb on - strand, within DvMF_3042at 3839.601 kb on + strand, within DvMF_3042at 3839.609 kb on - strand, within DvMF_3042at 3839.691 kb on - strand, within DvMF_3042at 3839.765 kb on - strand, within DvMF_3042at 3840.090 kb on + strandat 3840.129 kb on + strand, within DvMF_3043at 3840.129 kb on + strand, within DvMF_3043at 3840.137 kb on - strand, within DvMF_3043at 3840.147 kb on - strand, within DvMF_3043at 3840.172 kb on - strand, within DvMF_3043at 3840.436 kb on - strand, within DvMF_3043at 3840.673 kb on + strand, within DvMF_3043at 3840.698 kb on - strand, within DvMF_3043

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0468 mg/ml
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3,837,943 - +1.9
3,838,586 + DvMF_3041 0.53 -0.1
3,838,594 - DvMF_3041 0.54 -0.1
3,839,067 - DvMF_3042 0.13 -0.1
3,839,307 - DvMF_3042 0.38 -0.8
3,839,601 + DvMF_3042 0.68 -0.3
3,839,609 - DvMF_3042 0.69 -0.3
3,839,691 - DvMF_3042 0.78 +0.3
3,839,765 - DvMF_3042 0.85 -0.3
3,840,090 + +0.5
3,840,129 + DvMF_3043 0.13 -0.3
3,840,129 + DvMF_3043 0.13 +1.6
3,840,137 - DvMF_3043 0.14 -0.2
3,840,147 - DvMF_3043 0.15 -0.2
3,840,172 - DvMF_3043 0.17 -0.5
3,840,436 - DvMF_3043 0.45 -0.2
3,840,673 + DvMF_3043 0.69 +0.1
3,840,698 - DvMF_3043 0.72 -0.1

Or see this region's nucleotide sequence