Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2906

Experiment: MoYLS4 with Carbenicillin 0.0468 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2905 and DvMF_2906 are separated by 117 nucleotidesDvMF_2906 and DvMF_2907 are separated by 347 nucleotidesDvMF_2907 and DvMF_2908 are separated by 169 nucleotides DvMF_2905: DvMF_2905 - surface antigen (D15) (RefSeq), at 3,670,950 to 3,673,319 _2905 DvMF_2906: DvMF_2906 - hypothetical protein (RefSeq), at 3,673,437 to 3,674,207 _2906 DvMF_2907: DvMF_2907 - hypothetical protein (RefSeq), at 3,674,555 to 3,674,890 _2907 DvMF_2908: DvMF_2908 - MJ0042 family finger-like protein (RefSeq), at 3,675,060 to 3,676,760 _2908 Position (kb) 3673 3674 3675Strain fitness (log2 ratio) -3 -2 -1 0 1at 3672.526 kb on + strand, within DvMF_2905at 3672.717 kb on + strand, within DvMF_2905at 3672.898 kb on + strand, within DvMF_2905at 3673.193 kb on + strandat 3673.241 kb on + strandat 3673.361 kb on - strandat 3673.469 kb on - strandat 3673.792 kb on - strand, within DvMF_2906at 3674.044 kb on + strand, within DvMF_2906at 3674.112 kb on + strand, within DvMF_2906at 3674.139 kb on - strandat 3674.577 kb on - strandat 3674.580 kb on + strandat 3674.954 kb on - strandat 3675.013 kb on + strandat 3675.200 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0468 mg/ml
remove
3,672,526 + DvMF_2905 0.66 -0.7
3,672,717 + DvMF_2905 0.75 -0.4
3,672,898 + DvMF_2905 0.82 -0.3
3,673,193 + -0.1
3,673,241 + -0.3
3,673,361 - -0.5
3,673,469 - -0.5
3,673,792 - DvMF_2906 0.46 -1.1
3,674,044 + DvMF_2906 0.79 -0.6
3,674,112 + DvMF_2906 0.88 -0.9
3,674,139 - -0.4
3,674,577 - -0.3
3,674,580 + -0.7
3,674,954 - -0.2
3,675,013 + -0.1
3,675,200 - -3.0

Or see this region's nucleotide sequence