Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2079

Experiment: MoYLS4 with Carbenicillin 0.0468 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2078 and DvMF_2079 are separated by 360 nucleotidesDvMF_2079 and DvMF_2080 are separated by 559 nucleotides DvMF_2078: DvMF_2078 - peptidyl-prolyl cis-trans isomerase cyclophilin type (RefSeq), at 2,582,664 to 2,583,170 _2078 DvMF_2079: DvMF_2079 - NmrA family protein (RefSeq), at 2,583,531 to 2,585,348 _2079 DvMF_2080: DvMF_2080 - Peptidase M23 (RefSeq), at 2,585,908 to 2,587,233 _2080 Position (kb) 2583 2584 2585 2586Strain fitness (log2 ratio) -3 -2 -1 0 1at 2582.669 kb on - strandat 2582.741 kb on - strand, within DvMF_2078at 2583.033 kb on - strand, within DvMF_2078at 2583.068 kb on - strand, within DvMF_2078at 2583.134 kb on - strandat 2583.136 kb on + strandat 2583.326 kb on + strandat 2583.417 kb on + strandat 2583.636 kb on + strandat 2583.736 kb on - strand, within DvMF_2079at 2583.902 kb on + strand, within DvMF_2079at 2583.932 kb on + strand, within DvMF_2079at 2583.963 kb on - strand, within DvMF_2079at 2584.057 kb on - strand, within DvMF_2079at 2584.270 kb on + strand, within DvMF_2079at 2584.451 kb on - strand, within DvMF_2079at 2584.483 kb on + strand, within DvMF_2079at 2584.519 kb on + strand, within DvMF_2079at 2584.556 kb on - strand, within DvMF_2079at 2584.647 kb on + strand, within DvMF_2079at 2584.770 kb on + strand, within DvMF_2079at 2584.903 kb on + strand, within DvMF_2079at 2584.964 kb on - strand, within DvMF_2079at 2585.138 kb on + strand, within DvMF_2079at 2585.187 kb on - strandat 2585.253 kb on + strandat 2585.317 kb on - strandat 2585.353 kb on - strandat 2585.375 kb on - strandat 2585.414 kb on - strandat 2585.449 kb on + strandat 2585.555 kb on - strandat 2586.301 kb on - strand, within DvMF_2080at 2586.301 kb on - strand, within DvMF_2080at 2586.311 kb on - strand, within DvMF_2080at 2586.323 kb on - strand, within DvMF_2080

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0468 mg/ml
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2,582,669 - -0.7
2,582,741 - DvMF_2078 0.15 -0.1
2,583,033 - DvMF_2078 0.73 -0.3
2,583,068 - DvMF_2078 0.80 -0.1
2,583,134 - -0.8
2,583,136 + -0.2
2,583,326 + -0.5
2,583,417 + +0.1
2,583,636 + -0.2
2,583,736 - DvMF_2079 0.11 +0.0
2,583,902 + DvMF_2079 0.20 -0.1
2,583,932 + DvMF_2079 0.22 -0.0
2,583,963 - DvMF_2079 0.24 -1.1
2,584,057 - DvMF_2079 0.29 -0.6
2,584,270 + DvMF_2079 0.41 +0.1
2,584,451 - DvMF_2079 0.51 +0.2
2,584,483 + DvMF_2079 0.52 +0.0
2,584,519 + DvMF_2079 0.54 -0.1
2,584,556 - DvMF_2079 0.56 +0.7
2,584,647 + DvMF_2079 0.61 +0.2
2,584,770 + DvMF_2079 0.68 -0.1
2,584,903 + DvMF_2079 0.75 -0.4
2,584,964 - DvMF_2079 0.79 -0.3
2,585,138 + DvMF_2079 0.88 +0.0
2,585,187 - -0.0
2,585,253 + -0.9
2,585,317 - +0.1
2,585,353 - +0.0
2,585,375 - -0.3
2,585,414 - -0.4
2,585,449 + -0.2
2,585,555 - -0.6
2,586,301 - DvMF_2080 0.30 -3.0
2,586,301 - DvMF_2080 0.30 -3.6
2,586,311 - DvMF_2080 0.30 -3.0
2,586,323 - DvMF_2080 0.31 -3.2

Or see this region's nucleotide sequence