Experiment: MoYLS4 with Carbenicillin 0.0468 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2078 and DvMF_2079 are separated by 360 nucleotides DvMF_2079 and DvMF_2080 are separated by 559 nucleotides
DvMF_2078: DvMF_2078 - peptidyl-prolyl cis-trans isomerase cyclophilin type (RefSeq), at 2,582,664 to 2,583,170
_2078
DvMF_2079: DvMF_2079 - NmrA family protein (RefSeq), at 2,583,531 to 2,585,348
_2079
DvMF_2080: DvMF_2080 - Peptidase M23 (RefSeq), at 2,585,908 to 2,587,233
_2080
Position (kb)
2583
2584
2585
2586 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2582.669 kb on - strand at 2582.741 kb on - strand, within DvMF_2078 at 2583.033 kb on - strand, within DvMF_2078 at 2583.068 kb on - strand, within DvMF_2078 at 2583.134 kb on - strand at 2583.136 kb on + strand at 2583.326 kb on + strand at 2583.417 kb on + strand at 2583.636 kb on + strand at 2583.736 kb on - strand, within DvMF_2079 at 2583.902 kb on + strand, within DvMF_2079 at 2583.932 kb on + strand, within DvMF_2079 at 2583.963 kb on - strand, within DvMF_2079 at 2584.057 kb on - strand, within DvMF_2079 at 2584.270 kb on + strand, within DvMF_2079 at 2584.451 kb on - strand, within DvMF_2079 at 2584.483 kb on + strand, within DvMF_2079 at 2584.519 kb on + strand, within DvMF_2079 at 2584.556 kb on - strand, within DvMF_2079 at 2584.647 kb on + strand, within DvMF_2079 at 2584.770 kb on + strand, within DvMF_2079 at 2584.903 kb on + strand, within DvMF_2079 at 2584.964 kb on - strand, within DvMF_2079 at 2585.138 kb on + strand, within DvMF_2079 at 2585.187 kb on - strand at 2585.253 kb on + strand at 2585.317 kb on - strand at 2585.353 kb on - strand at 2585.375 kb on - strand at 2585.414 kb on - strand at 2585.449 kb on + strand at 2585.555 kb on - strand at 2586.301 kb on - strand, within DvMF_2080 at 2586.301 kb on - strand, within DvMF_2080 at 2586.311 kb on - strand, within DvMF_2080 at 2586.323 kb on - strand, within DvMF_2080
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0468 mg/ml remove 2,582,669 - -0.7 2,582,741 - DvMF_2078 0.15 -0.1 2,583,033 - DvMF_2078 0.73 -0.3 2,583,068 - DvMF_2078 0.80 -0.1 2,583,134 - -0.8 2,583,136 + -0.2 2,583,326 + -0.5 2,583,417 + +0.1 2,583,636 + -0.2 2,583,736 - DvMF_2079 0.11 +0.0 2,583,902 + DvMF_2079 0.20 -0.1 2,583,932 + DvMF_2079 0.22 -0.0 2,583,963 - DvMF_2079 0.24 -1.1 2,584,057 - DvMF_2079 0.29 -0.6 2,584,270 + DvMF_2079 0.41 +0.1 2,584,451 - DvMF_2079 0.51 +0.2 2,584,483 + DvMF_2079 0.52 +0.0 2,584,519 + DvMF_2079 0.54 -0.1 2,584,556 - DvMF_2079 0.56 +0.7 2,584,647 + DvMF_2079 0.61 +0.2 2,584,770 + DvMF_2079 0.68 -0.1 2,584,903 + DvMF_2079 0.75 -0.4 2,584,964 - DvMF_2079 0.79 -0.3 2,585,138 + DvMF_2079 0.88 +0.0 2,585,187 - -0.0 2,585,253 + -0.9 2,585,317 - +0.1 2,585,353 - +0.0 2,585,375 - -0.3 2,585,414 - -0.4 2,585,449 + -0.2 2,585,555 - -0.6 2,586,301 - DvMF_2080 0.30 -3.0 2,586,301 - DvMF_2080 0.30 -3.6 2,586,311 - DvMF_2080 0.30 -3.0 2,586,323 - DvMF_2080 0.31 -3.2
Or see this region's nucleotide sequence