Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2078

Experiment: MoYLS4 with Carbenicillin 0.0468 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2077 and DvMF_2078 are separated by 301 nucleotidesDvMF_2078 and DvMF_2079 are separated by 360 nucleotides DvMF_2077: DvMF_2077 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq), at 2,580,554 to 2,582,362 _2077 DvMF_2078: DvMF_2078 - peptidyl-prolyl cis-trans isomerase cyclophilin type (RefSeq), at 2,582,664 to 2,583,170 _2078 DvMF_2079: DvMF_2079 - NmrA family protein (RefSeq), at 2,583,531 to 2,585,348 _2079 Position (kb) 2582 2583 2584Strain fitness (log2 ratio) -1 0 1at 2581.716 kb on + strand, within DvMF_2077at 2581.777 kb on + strand, within DvMF_2077at 2581.809 kb on + strand, within DvMF_2077at 2581.861 kb on + strand, within DvMF_2077at 2581.905 kb on - strand, within DvMF_2077at 2582.033 kb on - strand, within DvMF_2077at 2582.383 kb on + strandat 2582.457 kb on - strandat 2582.669 kb on - strandat 2582.741 kb on - strand, within DvMF_2078at 2583.033 kb on - strand, within DvMF_2078at 2583.068 kb on - strand, within DvMF_2078at 2583.134 kb on - strandat 2583.136 kb on + strandat 2583.326 kb on + strandat 2583.417 kb on + strandat 2583.636 kb on + strandat 2583.736 kb on - strand, within DvMF_2079at 2583.902 kb on + strand, within DvMF_2079at 2583.932 kb on + strand, within DvMF_2079at 2583.963 kb on - strand, within DvMF_2079at 2584.057 kb on - strand, within DvMF_2079

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0468 mg/ml
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2,581,716 + DvMF_2077 0.64 +0.2
2,581,777 + DvMF_2077 0.68 -0.5
2,581,809 + DvMF_2077 0.69 -0.5
2,581,861 + DvMF_2077 0.72 +0.1
2,581,905 - DvMF_2077 0.75 -0.5
2,582,033 - DvMF_2077 0.82 -0.1
2,582,383 + -0.7
2,582,457 - -0.7
2,582,669 - -0.7
2,582,741 - DvMF_2078 0.15 -0.1
2,583,033 - DvMF_2078 0.73 -0.3
2,583,068 - DvMF_2078 0.80 -0.1
2,583,134 - -0.8
2,583,136 + -0.2
2,583,326 + -0.5
2,583,417 + +0.1
2,583,636 + -0.2
2,583,736 - DvMF_2079 0.11 +0.0
2,583,902 + DvMF_2079 0.20 -0.1
2,583,932 + DvMF_2079 0.22 -0.0
2,583,963 - DvMF_2079 0.24 -1.1
2,584,057 - DvMF_2079 0.29 -0.6

Or see this region's nucleotide sequence