Experiment: MoYLS4 with Carbenicillin 0.0468 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1639 and DvMF_1640 are separated by 38 nucleotides DvMF_1640 and DvMF_1641 are separated by 79 nucleotides DvMF_1641 and DvMF_1642 are separated by 2 nucleotides DvMF_1642 and DvMF_1643 are separated by 2 nucleotides
DvMF_1639: DvMF_1639 - Phage-related protein tail component-like protein (RefSeq), at 2,018,379 to 2,021,135
_1639
DvMF_1640: DvMF_1640 - hypothetical protein (RefSeq), at 2,021,174 to 2,021,533
_1640
DvMF_1641: DvMF_1641 - hypothetical protein (RefSeq), at 2,021,613 to 2,022,518
_1641
DvMF_1642: DvMF_1642 - hypothetical protein (RefSeq), at 2,022,521 to 2,022,874
_1642
DvMF_1643: DvMF_1643 - phage tape measure protein (RefSeq), at 2,022,877 to 2,025,693
_1643
Position (kb)
2021
2022
2023 Strain fitness (log2 ratio)
-1
0
1 at 2020.728 kb on - strand, within DvMF_1639 at 2020.826 kb on - strand, within DvMF_1639 at 2020.918 kb on + strand at 2020.981 kb on - strand at 2020.981 kb on - strand at 2021.008 kb on - strand at 2021.008 kb on - strand at 2021.034 kb on + strand at 2021.073 kb on - strand at 2021.148 kb on + strand at 2021.214 kb on - strand, within DvMF_1640 at 2021.346 kb on - strand, within DvMF_1640 at 2021.346 kb on - strand, within DvMF_1640 at 2021.374 kb on - strand, within DvMF_1640 at 2021.400 kb on + strand, within DvMF_1640 at 2021.462 kb on + strand, within DvMF_1640 at 2021.470 kb on - strand, within DvMF_1640 at 2021.509 kb on + strand at 2021.682 kb on - strand at 2021.810 kb on + strand, within DvMF_1641 at 2021.833 kb on - strand, within DvMF_1641 at 2021.904 kb on - strand, within DvMF_1641 at 2022.016 kb on + strand, within DvMF_1641 at 2022.024 kb on - strand, within DvMF_1641 at 2022.120 kb on + strand, within DvMF_1641 at 2022.138 kb on - strand, within DvMF_1641 at 2022.175 kb on - strand, within DvMF_1641 at 2022.175 kb on - strand, within DvMF_1641 at 2022.175 kb on - strand, within DvMF_1641 at 2022.186 kb on - strand, within DvMF_1641 at 2022.238 kb on - strand, within DvMF_1641 at 2022.258 kb on + strand, within DvMF_1641 at 2022.311 kb on - strand, within DvMF_1641 at 2022.334 kb on - strand, within DvMF_1641 at 2022.461 kb on + strand at 2022.514 kb on + strand at 2022.522 kb on - strand at 2022.549 kb on - strand at 2022.654 kb on + strand, within DvMF_1642 at 2022.908 kb on + strand at 2023.079 kb on - strand at 2023.230 kb on + strand, within DvMF_1643 at 2023.292 kb on + strand, within DvMF_1643 at 2023.315 kb on - strand, within DvMF_1643 at 2023.355 kb on + strand, within DvMF_1643
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0468 mg/ml remove 2,020,728 - DvMF_1639 0.85 -0.2 2,020,826 - DvMF_1639 0.89 -0.0 2,020,918 + -0.0 2,020,981 - -0.4 2,020,981 - -0.1 2,021,008 - +0.3 2,021,008 - -0.1 2,021,034 + +0.0 2,021,073 - +0.1 2,021,148 + -0.4 2,021,214 - DvMF_1640 0.11 +0.4 2,021,346 - DvMF_1640 0.48 -0.1 2,021,346 - DvMF_1640 0.48 -0.4 2,021,374 - DvMF_1640 0.56 +0.1 2,021,400 + DvMF_1640 0.63 +0.1 2,021,462 + DvMF_1640 0.80 +0.0 2,021,470 - DvMF_1640 0.82 +0.8 2,021,509 + -0.3 2,021,682 - +0.6 2,021,810 + DvMF_1641 0.22 +0.3 2,021,833 - DvMF_1641 0.24 +0.3 2,021,904 - DvMF_1641 0.32 +0.2 2,022,016 + DvMF_1641 0.44 +0.4 2,022,024 - DvMF_1641 0.45 -0.0 2,022,120 + DvMF_1641 0.56 -0.2 2,022,138 - DvMF_1641 0.58 +0.0 2,022,175 - DvMF_1641 0.62 +0.1 2,022,175 - DvMF_1641 0.62 -0.0 2,022,175 - DvMF_1641 0.62 +0.1 2,022,186 - DvMF_1641 0.63 +0.1 2,022,238 - DvMF_1641 0.69 -0.2 2,022,258 + DvMF_1641 0.71 +0.1 2,022,311 - DvMF_1641 0.77 +0.5 2,022,334 - DvMF_1641 0.80 -0.2 2,022,461 + -0.2 2,022,514 + +0.2 2,022,522 - -0.4 2,022,549 - -0.1 2,022,654 + DvMF_1642 0.38 -0.1 2,022,908 + +0.4 2,023,079 - +0.5 2,023,230 + DvMF_1643 0.13 +0.1 2,023,292 + DvMF_1643 0.15 -0.2 2,023,315 - DvMF_1643 0.16 +0.2 2,023,355 + DvMF_1643 0.17 -0.4
Or see this region's nucleotide sequence