Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1641

Experiment: MoYLS4 with Carbenicillin 0.0468 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1639 and DvMF_1640 are separated by 38 nucleotidesDvMF_1640 and DvMF_1641 are separated by 79 nucleotidesDvMF_1641 and DvMF_1642 are separated by 2 nucleotidesDvMF_1642 and DvMF_1643 are separated by 2 nucleotides DvMF_1639: DvMF_1639 - Phage-related protein tail component-like protein (RefSeq), at 2,018,379 to 2,021,135 _1639 DvMF_1640: DvMF_1640 - hypothetical protein (RefSeq), at 2,021,174 to 2,021,533 _1640 DvMF_1641: DvMF_1641 - hypothetical protein (RefSeq), at 2,021,613 to 2,022,518 _1641 DvMF_1642: DvMF_1642 - hypothetical protein (RefSeq), at 2,022,521 to 2,022,874 _1642 DvMF_1643: DvMF_1643 - phage tape measure protein (RefSeq), at 2,022,877 to 2,025,693 _1643 Position (kb) 2021 2022 2023Strain fitness (log2 ratio) -1 0 1at 2020.728 kb on - strand, within DvMF_1639at 2020.826 kb on - strand, within DvMF_1639at 2020.918 kb on + strandat 2020.981 kb on - strandat 2020.981 kb on - strandat 2021.008 kb on - strandat 2021.008 kb on - strandat 2021.034 kb on + strandat 2021.073 kb on - strandat 2021.148 kb on + strandat 2021.214 kb on - strand, within DvMF_1640at 2021.346 kb on - strand, within DvMF_1640at 2021.346 kb on - strand, within DvMF_1640at 2021.374 kb on - strand, within DvMF_1640at 2021.400 kb on + strand, within DvMF_1640at 2021.462 kb on + strand, within DvMF_1640at 2021.470 kb on - strand, within DvMF_1640at 2021.509 kb on + strandat 2021.682 kb on - strandat 2021.810 kb on + strand, within DvMF_1641at 2021.833 kb on - strand, within DvMF_1641at 2021.904 kb on - strand, within DvMF_1641at 2022.016 kb on + strand, within DvMF_1641at 2022.024 kb on - strand, within DvMF_1641at 2022.120 kb on + strand, within DvMF_1641at 2022.138 kb on - strand, within DvMF_1641at 2022.175 kb on - strand, within DvMF_1641at 2022.175 kb on - strand, within DvMF_1641at 2022.175 kb on - strand, within DvMF_1641at 2022.186 kb on - strand, within DvMF_1641at 2022.238 kb on - strand, within DvMF_1641at 2022.258 kb on + strand, within DvMF_1641at 2022.311 kb on - strand, within DvMF_1641at 2022.334 kb on - strand, within DvMF_1641at 2022.461 kb on + strandat 2022.514 kb on + strandat 2022.522 kb on - strandat 2022.549 kb on - strandat 2022.654 kb on + strand, within DvMF_1642at 2022.908 kb on + strandat 2023.079 kb on - strandat 2023.230 kb on + strand, within DvMF_1643at 2023.292 kb on + strand, within DvMF_1643at 2023.315 kb on - strand, within DvMF_1643at 2023.355 kb on + strand, within DvMF_1643

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0468 mg/ml
remove
2,020,728 - DvMF_1639 0.85 -0.2
2,020,826 - DvMF_1639 0.89 -0.0
2,020,918 + -0.0
2,020,981 - -0.4
2,020,981 - -0.1
2,021,008 - +0.3
2,021,008 - -0.1
2,021,034 + +0.0
2,021,073 - +0.1
2,021,148 + -0.4
2,021,214 - DvMF_1640 0.11 +0.4
2,021,346 - DvMF_1640 0.48 -0.1
2,021,346 - DvMF_1640 0.48 -0.4
2,021,374 - DvMF_1640 0.56 +0.1
2,021,400 + DvMF_1640 0.63 +0.1
2,021,462 + DvMF_1640 0.80 +0.0
2,021,470 - DvMF_1640 0.82 +0.8
2,021,509 + -0.3
2,021,682 - +0.6
2,021,810 + DvMF_1641 0.22 +0.3
2,021,833 - DvMF_1641 0.24 +0.3
2,021,904 - DvMF_1641 0.32 +0.2
2,022,016 + DvMF_1641 0.44 +0.4
2,022,024 - DvMF_1641 0.45 -0.0
2,022,120 + DvMF_1641 0.56 -0.2
2,022,138 - DvMF_1641 0.58 +0.0
2,022,175 - DvMF_1641 0.62 +0.1
2,022,175 - DvMF_1641 0.62 -0.0
2,022,175 - DvMF_1641 0.62 +0.1
2,022,186 - DvMF_1641 0.63 +0.1
2,022,238 - DvMF_1641 0.69 -0.2
2,022,258 + DvMF_1641 0.71 +0.1
2,022,311 - DvMF_1641 0.77 +0.5
2,022,334 - DvMF_1641 0.80 -0.2
2,022,461 + -0.2
2,022,514 + +0.2
2,022,522 - -0.4
2,022,549 - -0.1
2,022,654 + DvMF_1642 0.38 -0.1
2,022,908 + +0.4
2,023,079 - +0.5
2,023,230 + DvMF_1643 0.13 +0.1
2,023,292 + DvMF_1643 0.15 -0.2
2,023,315 - DvMF_1643 0.16 +0.2
2,023,355 + DvMF_1643 0.17 -0.4

Or see this region's nucleotide sequence