Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1517

Experiment: MoYLS4 with Carbenicillin 0.0468 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1516 and DvMF_1517 overlap by 4 nucleotidesDvMF_1517 and DvMF_1518 are separated by 794 nucleotides DvMF_1516: DvMF_1516 - efflux transporter, RND family, MFP subunit (RefSeq), at 1,870,284 to 1,871,606 _1516 DvMF_1517: DvMF_1517 - transcriptional regulator, TetR family (RefSeq), at 1,871,603 to 1,872,721 _1517 DvMF_1518: DvMF_1518 - NADH dehydrogenase (quinone) (RefSeq), at 1,873,516 to 1,875,462 _1518 Position (kb) 1871 1872 1873Strain fitness (log2 ratio) -2 -1 0 1at 1870.731 kb on + strand, within DvMF_1516at 1870.858 kb on + strand, within DvMF_1516at 1870.927 kb on - strand, within DvMF_1516at 1870.932 kb on - strand, within DvMF_1516at 1871.299 kb on - strand, within DvMF_1516at 1871.307 kb on - strand, within DvMF_1516at 1871.385 kb on + strand, within DvMF_1516at 1871.385 kb on + strand, within DvMF_1516at 1871.385 kb on + strand, within DvMF_1516at 1871.385 kb on + strand, within DvMF_1516at 1871.550 kb on + strandat 1871.584 kb on - strandat 1871.772 kb on - strand, within DvMF_1517at 1871.885 kb on - strand, within DvMF_1517at 1871.890 kb on + strand, within DvMF_1517at 1872.083 kb on - strand, within DvMF_1517at 1872.100 kb on + strand, within DvMF_1517at 1872.272 kb on + strand, within DvMF_1517at 1872.280 kb on - strand, within DvMF_1517at 1872.295 kb on - strand, within DvMF_1517at 1872.436 kb on + strand, within DvMF_1517at 1872.485 kb on - strand, within DvMF_1517at 1872.504 kb on - strand, within DvMF_1517at 1872.552 kb on + strand, within DvMF_1517at 1872.586 kb on - strand, within DvMF_1517at 1872.649 kb on + strandat 1872.957 kb on - strandat 1872.957 kb on - strandat 1873.028 kb on + strandat 1873.163 kb on + strandat 1873.490 kb on + strandat 1873.502 kb on + strandat 1873.510 kb on - strandat 1873.521 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0468 mg/ml
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1,870,731 + DvMF_1516 0.34 -1.6
1,870,858 + DvMF_1516 0.43 -1.3
1,870,927 - DvMF_1516 0.49 -1.4
1,870,932 - DvMF_1516 0.49 -0.8
1,871,299 - DvMF_1516 0.77 -1.9
1,871,307 - DvMF_1516 0.77 -1.7
1,871,385 + DvMF_1516 0.83 -1.5
1,871,385 + DvMF_1516 0.83 -1.8
1,871,385 + DvMF_1516 0.83 -2.1
1,871,385 + DvMF_1516 0.83 -1.6
1,871,550 + -2.3
1,871,584 - -2.6
1,871,772 - DvMF_1517 0.15 +0.1
1,871,885 - DvMF_1517 0.25 +0.3
1,871,890 + DvMF_1517 0.26 +0.2
1,872,083 - DvMF_1517 0.43 +0.2
1,872,100 + DvMF_1517 0.44 -1.0
1,872,272 + DvMF_1517 0.60 +0.3
1,872,280 - DvMF_1517 0.61 +0.1
1,872,295 - DvMF_1517 0.62 +0.2
1,872,436 + DvMF_1517 0.74 -1.2
1,872,485 - DvMF_1517 0.79 +0.1
1,872,504 - DvMF_1517 0.81 +0.1
1,872,552 + DvMF_1517 0.85 -0.1
1,872,586 - DvMF_1517 0.88 -0.1
1,872,649 + -0.4
1,872,957 - -0.0
1,872,957 - -0.0
1,873,028 + -0.5
1,873,163 + -0.2
1,873,490 + -0.1
1,873,502 + -0.1
1,873,510 - +0.4
1,873,521 + +0.0

Or see this region's nucleotide sequence