Experiment: MoYLS4 with Carbenicillin 0.0468 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1516 and DvMF_1517 overlap by 4 nucleotides DvMF_1517 and DvMF_1518 are separated by 794 nucleotides
DvMF_1516: DvMF_1516 - efflux transporter, RND family, MFP subunit (RefSeq), at 1,870,284 to 1,871,606
_1516
DvMF_1517: DvMF_1517 - transcriptional regulator, TetR family (RefSeq), at 1,871,603 to 1,872,721
_1517
DvMF_1518: DvMF_1518 - NADH dehydrogenase (quinone) (RefSeq), at 1,873,516 to 1,875,462
_1518
Position (kb)
1871
1872
1873 Strain fitness (log2 ratio)
-2
-1
0
1 at 1870.731 kb on + strand, within DvMF_1516 at 1870.858 kb on + strand, within DvMF_1516 at 1870.927 kb on - strand, within DvMF_1516 at 1870.932 kb on - strand, within DvMF_1516 at 1871.299 kb on - strand, within DvMF_1516 at 1871.307 kb on - strand, within DvMF_1516 at 1871.385 kb on + strand, within DvMF_1516 at 1871.385 kb on + strand, within DvMF_1516 at 1871.385 kb on + strand, within DvMF_1516 at 1871.385 kb on + strand, within DvMF_1516 at 1871.550 kb on + strand at 1871.584 kb on - strand at 1871.772 kb on - strand, within DvMF_1517 at 1871.885 kb on - strand, within DvMF_1517 at 1871.890 kb on + strand, within DvMF_1517 at 1872.083 kb on - strand, within DvMF_1517 at 1872.100 kb on + strand, within DvMF_1517 at 1872.272 kb on + strand, within DvMF_1517 at 1872.280 kb on - strand, within DvMF_1517 at 1872.295 kb on - strand, within DvMF_1517 at 1872.436 kb on + strand, within DvMF_1517 at 1872.485 kb on - strand, within DvMF_1517 at 1872.504 kb on - strand, within DvMF_1517 at 1872.552 kb on + strand, within DvMF_1517 at 1872.586 kb on - strand, within DvMF_1517 at 1872.649 kb on + strand at 1872.957 kb on - strand at 1872.957 kb on - strand at 1873.028 kb on + strand at 1873.163 kb on + strand at 1873.490 kb on + strand at 1873.502 kb on + strand at 1873.510 kb on - strand at 1873.521 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0468 mg/ml remove 1,870,731 + DvMF_1516 0.34 -1.6 1,870,858 + DvMF_1516 0.43 -1.3 1,870,927 - DvMF_1516 0.49 -1.4 1,870,932 - DvMF_1516 0.49 -0.8 1,871,299 - DvMF_1516 0.77 -1.9 1,871,307 - DvMF_1516 0.77 -1.7 1,871,385 + DvMF_1516 0.83 -1.5 1,871,385 + DvMF_1516 0.83 -1.8 1,871,385 + DvMF_1516 0.83 -2.1 1,871,385 + DvMF_1516 0.83 -1.6 1,871,550 + -2.3 1,871,584 - -2.6 1,871,772 - DvMF_1517 0.15 +0.1 1,871,885 - DvMF_1517 0.25 +0.3 1,871,890 + DvMF_1517 0.26 +0.2 1,872,083 - DvMF_1517 0.43 +0.2 1,872,100 + DvMF_1517 0.44 -1.0 1,872,272 + DvMF_1517 0.60 +0.3 1,872,280 - DvMF_1517 0.61 +0.1 1,872,295 - DvMF_1517 0.62 +0.2 1,872,436 + DvMF_1517 0.74 -1.2 1,872,485 - DvMF_1517 0.79 +0.1 1,872,504 - DvMF_1517 0.81 +0.1 1,872,552 + DvMF_1517 0.85 -0.1 1,872,586 - DvMF_1517 0.88 -0.1 1,872,649 + -0.4 1,872,957 - -0.0 1,872,957 - -0.0 1,873,028 + -0.5 1,873,163 + -0.2 1,873,490 + -0.1 1,873,502 + -0.1 1,873,510 - +0.4 1,873,521 + +0.0
Or see this region's nucleotide sequence