Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1282

Experiment: MoYLS4 with Carbenicillin 0.0468 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1279 and DvMF_1280 overlap by 4 nucleotidesDvMF_1280 and DvMF_1281 are separated by 24 nucleotidesDvMF_1281 and DvMF_1282 are separated by 129 nucleotidesDvMF_1282 and DvMF_1283 overlap by 24 nucleotides DvMF_1279: DvMF_1279 - hypothetical protein (RefSeq), at 1,569,794 to 1,570,288 _1279 DvMF_1280: DvMF_1280 - hypothetical protein (RefSeq), at 1,570,285 to 1,570,527 _1280 DvMF_1281: DvMF_1281 - hypothetical protein (RefSeq), at 1,570,552 to 1,571,151 _1281 DvMF_1282: DvMF_1282 - portal protein, putative (RefSeq), at 1,571,281 to 1,572,762 _1282 DvMF_1283: DvMF_1283 - hypothetical protein (RefSeq), at 1,572,739 to 1,573,671 _1283 Position (kb) 1571 1572 1573Strain fitness (log2 ratio) -1 0 1at 1570.535 kb on - strandat 1570.626 kb on - strand, within DvMF_1281at 1570.747 kb on + strand, within DvMF_1281at 1570.845 kb on + strand, within DvMF_1281at 1571.117 kb on + strandat 1571.400 kb on - strandat 1571.469 kb on + strand, within DvMF_1282at 1571.649 kb on + strand, within DvMF_1282at 1571.662 kb on - strand, within DvMF_1282at 1571.710 kb on - strand, within DvMF_1282at 1571.710 kb on - strand, within DvMF_1282at 1571.710 kb on - strand, within DvMF_1282at 1571.849 kb on + strand, within DvMF_1282at 1571.854 kb on + strand, within DvMF_1282at 1571.854 kb on + strand, within DvMF_1282at 1571.855 kb on + strand, within DvMF_1282at 1571.862 kb on - strand, within DvMF_1282at 1571.883 kb on + strand, within DvMF_1282at 1571.883 kb on + strand, within DvMF_1282at 1571.891 kb on - strand, within DvMF_1282at 1571.891 kb on - strand, within DvMF_1282at 1571.912 kb on - strand, within DvMF_1282at 1572.082 kb on - strand, within DvMF_1282at 1572.137 kb on + strand, within DvMF_1282at 1572.173 kb on - strand, within DvMF_1282at 1572.345 kb on - strand, within DvMF_1282at 1572.576 kb on - strand, within DvMF_1282at 1572.683 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0468 mg/ml
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1,570,535 - +0.6
1,570,626 - DvMF_1281 0.12 +0.3
1,570,747 + DvMF_1281 0.33 +0.4
1,570,845 + DvMF_1281 0.49 +0.0
1,571,117 + +0.1
1,571,400 - -0.3
1,571,469 + DvMF_1282 0.13 -0.1
1,571,649 + DvMF_1282 0.25 -0.4
1,571,662 - DvMF_1282 0.26 -1.3
1,571,710 - DvMF_1282 0.29 +0.2
1,571,710 - DvMF_1282 0.29 +0.4
1,571,710 - DvMF_1282 0.29 +0.6
1,571,849 + DvMF_1282 0.38 +0.1
1,571,854 + DvMF_1282 0.39 +0.2
1,571,854 + DvMF_1282 0.39 -0.2
1,571,855 + DvMF_1282 0.39 +0.0
1,571,862 - DvMF_1282 0.39 +0.0
1,571,883 + DvMF_1282 0.41 +0.3
1,571,883 + DvMF_1282 0.41 +0.0
1,571,891 - DvMF_1282 0.41 +0.1
1,571,891 - DvMF_1282 0.41 -0.2
1,571,912 - DvMF_1282 0.43 +0.4
1,572,082 - DvMF_1282 0.54 +0.1
1,572,137 + DvMF_1282 0.58 +0.2
1,572,173 - DvMF_1282 0.60 +0.5
1,572,345 - DvMF_1282 0.72 -0.5
1,572,576 - DvMF_1282 0.87 +0.1
1,572,683 - +0.2

Or see this region's nucleotide sequence