Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0812

Experiment: MoYLS4 with Carbenicillin 0.0468 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0811 and DvMF_0812 overlap by 4 nucleotidesDvMF_0812 and DvMF_0813 are separated by 422 nucleotides DvMF_0811: DvMF_0811 - FAD dependent oxidoreductase (RefSeq), at 978,208 to 979,836 _0811 DvMF_0812: DvMF_0812 - transcriptional regulator, DeoR family (RefSeq), at 979,833 to 980,795 _0812 DvMF_0813: DvMF_0813 - single-strand binding protein (RefSeq), at 981,218 to 981,760 _0813 Position (kb) 979 980 981Strain fitness (log2 ratio) -1 0 1at 979.245 kb on + strand, within DvMF_0811at 979.829 kb on - strandat 979.886 kb on - strandat 979.984 kb on - strand, within DvMF_0812at 980.099 kb on - strand, within DvMF_0812at 980.170 kb on - strand, within DvMF_0812at 980.187 kb on + strand, within DvMF_0812at 980.222 kb on + strand, within DvMF_0812at 980.384 kb on + strand, within DvMF_0812at 980.570 kb on + strand, within DvMF_0812at 980.753 kb on + strandat 980.761 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0468 mg/ml
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979,245 + DvMF_0811 0.64 +0.3
979,829 - +0.0
979,886 - -0.2
979,984 - DvMF_0812 0.16 -1.3
980,099 - DvMF_0812 0.28 -0.2
980,170 - DvMF_0812 0.35 -0.4
980,187 + DvMF_0812 0.37 -1.3
980,222 + DvMF_0812 0.40 -0.4
980,384 + DvMF_0812 0.57 -0.5
980,570 + DvMF_0812 0.77 +0.2
980,753 + +0.2
980,761 - +0.0

Or see this region's nucleotide sequence