Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0790

Experiment: MoYLS4 with Carbenicillin 0.0468 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0789 and DvMF_0790 are separated by 206 nucleotidesDvMF_0790 and DvMF_0791 are separated by 181 nucleotides DvMF_0789: DvMF_0789 - Non-specific serine/threonine protein kinase (RefSeq), at 949,088 to 952,297 _0789 DvMF_0790: DvMF_0790 - hypothetical protein (RefSeq), at 952,504 to 952,866 _0790 DvMF_0791: DvMF_0791 - no description, at 953,048 to 954,794 _0791 Position (kb) 952 953Strain fitness (log2 ratio) -1 0 1at 951.652 kb on + strand, within DvMF_0789at 952.294 kb on + strandat 952.364 kb on - strandat 952.479 kb on + strandat 952.638 kb on + strand, within DvMF_0790at 952.639 kb on + strand, within DvMF_0790at 953.045 kb on + strandat 953.091 kb on - strandat 953.144 kb on - strandat 953.160 kb on + strandat 953.160 kb on + strandat 953.160 kb on + strandat 953.332 kb on - strand, within DvMF_0791at 953.455 kb on + strand, within DvMF_0791at 953.550 kb on + strand, within DvMF_0791at 953.568 kb on - strand, within DvMF_0791

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0468 mg/ml
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951,652 + DvMF_0789 0.80 +0.1
952,294 + -0.5
952,364 - -0.1
952,479 + -0.7
952,638 + DvMF_0790 0.37 -0.9
952,639 + DvMF_0790 0.37 -0.7
953,045 + -0.2
953,091 - -0.5
953,144 - -0.2
953,160 + -0.1
953,160 + +0.1
953,160 + +0.0
953,332 - DvMF_0791 0.16 -0.3
953,455 + DvMF_0791 0.23 -0.4
953,550 + DvMF_0791 0.29 -0.8
953,568 - DvMF_0791 0.30 -0.7

Or see this region's nucleotide sequence