Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0763

Experiment: MoYLS4 with Carbenicillin 0.0468 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0762 and DvMF_0763 are separated by 266 nucleotidesDvMF_0763 and DvMF_0764 are separated by 242 nucleotides DvMF_0762: DvMF_0762 - glycosyl transferase family 2 (RefSeq), at 908,926 to 909,921 _0762 DvMF_0763: DvMF_0763 - diphosphate--fructose-6-phosphate 1-phosphotransferase (RefSeq), at 910,188 to 911,534 _0763 DvMF_0764: DvMF_0764 - UvrD/REP helicase (RefSeq), at 911,777 to 915,262 _0764 Position (kb) 910 911 912Strain fitness (log2 ratio) -1 0 1at 909.244 kb on - strand, within DvMF_0762at 909.395 kb on + strand, within DvMF_0762at 909.490 kb on - strand, within DvMF_0762at 909.497 kb on + strand, within DvMF_0762at 909.550 kb on - strand, within DvMF_0762at 909.633 kb on - strand, within DvMF_0762at 909.717 kb on - strand, within DvMF_0762at 910.037 kb on + strandat 910.049 kb on + strandat 910.185 kb on - strandat 910.309 kb on - strandat 910.392 kb on + strand, within DvMF_0763at 910.573 kb on + strand, within DvMF_0763at 910.595 kb on + strand, within DvMF_0763at 910.656 kb on + strand, within DvMF_0763at 910.796 kb on + strand, within DvMF_0763at 910.804 kb on - strand, within DvMF_0763at 911.161 kb on + strand, within DvMF_0763at 911.243 kb on + strand, within DvMF_0763at 911.249 kb on - strand, within DvMF_0763at 911.527 kb on - strandat 911.719 kb on + strandat 911.837 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0468 mg/ml
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909,244 - DvMF_0762 0.32 +0.9
909,395 + DvMF_0762 0.47 -0.6
909,490 - DvMF_0762 0.57 -0.3
909,497 + DvMF_0762 0.57 -0.8
909,550 - DvMF_0762 0.63 -0.3
909,633 - DvMF_0762 0.71 -0.2
909,717 - DvMF_0762 0.79 -0.4
910,037 + -0.2
910,049 + -0.1
910,185 - -1.4
910,309 - -0.8
910,392 + DvMF_0763 0.15 -0.5
910,573 + DvMF_0763 0.29 -0.8
910,595 + DvMF_0763 0.30 -0.2
910,656 + DvMF_0763 0.35 -0.1
910,796 + DvMF_0763 0.45 -0.2
910,804 - DvMF_0763 0.46 -0.4
911,161 + DvMF_0763 0.72 -0.4
911,243 + DvMF_0763 0.78 -0.4
911,249 - DvMF_0763 0.79 -0.1
911,527 - -0.4
911,719 + +0.6
911,837 - -1.1

Or see this region's nucleotide sequence