Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0507

Experiment: MoYLS4 with Carbenicillin 0.0468 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0506 and DvMF_0507 overlap by 16 nucleotidesDvMF_0507 and DvMF_0508 overlap by 4 nucleotides DvMF_0506: DvMF_0506 - PGAP1 family protein (RefSeq), at 594,654 to 595,739 _0506 DvMF_0507: DvMF_0507 - glycosyl transferase group 1 (RefSeq), at 595,724 to 596,998 _0507 DvMF_0508: DvMF_0508 - glycosyl transferase group 1 (RefSeq), at 596,995 to 598,908 _0508 Position (kb) 595 596 597Strain fitness (log2 ratio) -1 0 1at 594.999 kb on - strand, within DvMF_0506at 595.335 kb on + strand, within DvMF_0506at 595.335 kb on - strand, within DvMF_0506at 595.718 kb on - strandat 596.177 kb on - strand, within DvMF_0507at 596.184 kb on + strand, within DvMF_0507at 596.198 kb on - strand, within DvMF_0507at 596.316 kb on - strand, within DvMF_0507at 596.526 kb on - strand, within DvMF_0507at 596.536 kb on + strand, within DvMF_0507at 596.726 kb on - strand, within DvMF_0507at 596.798 kb on + strand, within DvMF_0507at 596.892 kb on - strandat 597.002 kb on - strandat 597.282 kb on - strand, within DvMF_0508at 597.410 kb on + strand, within DvMF_0508at 597.429 kb on + strand, within DvMF_0508at 597.569 kb on + strand, within DvMF_0508at 597.592 kb on + strand, within DvMF_0508at 597.685 kb on + strand, within DvMF_0508at 597.907 kb on - strand, within DvMF_0508at 597.917 kb on - strand, within DvMF_0508at 597.917 kb on - strand, within DvMF_0508

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0468 mg/ml
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594,999 - DvMF_0506 0.32 +0.0
595,335 + DvMF_0506 0.63 +0.1
595,335 - DvMF_0506 0.63 -0.7
595,718 - -0.2
596,177 - DvMF_0507 0.36 -0.3
596,184 + DvMF_0507 0.36 -0.4
596,198 - DvMF_0507 0.37 +0.2
596,316 - DvMF_0507 0.46 +0.0
596,526 - DvMF_0507 0.63 -0.3
596,536 + DvMF_0507 0.64 +0.4
596,726 - DvMF_0507 0.79 -0.2
596,798 + DvMF_0507 0.84 -0.1
596,892 - -0.1
597,002 - -0.3
597,282 - DvMF_0508 0.15 -0.4
597,410 + DvMF_0508 0.22 -0.2
597,429 + DvMF_0508 0.23 -0.5
597,569 + DvMF_0508 0.30 -0.2
597,592 + DvMF_0508 0.31 -0.2
597,685 + DvMF_0508 0.36 -0.6
597,907 - DvMF_0508 0.48 -0.1
597,917 - DvMF_0508 0.48 -0.2
597,917 - DvMF_0508 0.48 -0.2

Or see this region's nucleotide sequence