Experiment: MoYLS4 with Carbenicillin 0.0468 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ksgA and DvMF_0502 are separated by 197 nucleotides DvMF_0502 and DvMF_0503 are separated by 57 nucleotides DvMF_0503 and DvMF_0504 are separated by 133 nucleotides
DvMF_0501: ksgA - dimethyladenosine transferase (RefSeq), at 587,835 to 588,647
ksgA
DvMF_0502: DvMF_0502 - hypothetical protein (RefSeq), at 588,845 to 589,477
_0502
DvMF_0503: DvMF_0503 - elongation factor G (RefSeq), at 589,535 to 591,631
_0503
DvMF_0504: DvMF_0504 - hypothetical protein (RefSeq), at 591,765 to 592,781
_0504
Position (kb) 589
590
591
592 Strain fitness (log2 ratio) -1
0
1 at 588.792 kb on + strand at 589.392 kb on - strand, within DvMF_0502 at 589.458 kb on + strand at 589.491 kb on + strand at 589.662 kb on - strand at 589.788 kb on + strand, within DvMF_0503 at 589.788 kb on + strand, within DvMF_0503 at 589.796 kb on - strand, within DvMF_0503 at 589.796 kb on - strand, within DvMF_0503 at 589.796 kb on - strand, within DvMF_0503 at 589.806 kb on - strand, within DvMF_0503 at 589.902 kb on + strand, within DvMF_0503 at 589.908 kb on + strand, within DvMF_0503 at 589.910 kb on - strand, within DvMF_0503 at 589.915 kb on - strand, within DvMF_0503 at 589.915 kb on - strand, within DvMF_0503 at 589.916 kb on - strand, within DvMF_0503 at 589.938 kb on + strand, within DvMF_0503 at 590.129 kb on - strand, within DvMF_0503 at 590.156 kb on + strand, within DvMF_0503 at 590.231 kb on + strand, within DvMF_0503 at 590.400 kb on + strand, within DvMF_0503 at 590.418 kb on - strand, within DvMF_0503 at 590.684 kb on + strand, within DvMF_0503 at 590.692 kb on - strand, within DvMF_0503 at 590.696 kb on + strand, within DvMF_0503 at 590.783 kb on - strand, within DvMF_0503 at 590.925 kb on - strand, within DvMF_0503 at 591.161 kb on - strand, within DvMF_0503 at 591.292 kb on - strand, within DvMF_0503 at 591.376 kb on - strand, within DvMF_0503 at 591.441 kb on + strand at 591.509 kb on - strand at 591.548 kb on - strand at 591.701 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0468 mg/ml remove 588,792 + -0.3 589,392 - DvMF_0502 0.86 +0.2 589,458 + -0.7 589,491 + -0.1 589,662 - +0.1 589,788 + DvMF_0503 0.12 -0.7 589,788 + DvMF_0503 0.12 -0.2 589,796 - DvMF_0503 0.12 +0.0 589,796 - DvMF_0503 0.12 +0.8 589,796 - DvMF_0503 0.12 -0.2 589,806 - DvMF_0503 0.13 -0.1 589,902 + DvMF_0503 0.18 -0.0 589,908 + DvMF_0503 0.18 -0.1 589,910 - DvMF_0503 0.18 +0.0 589,915 - DvMF_0503 0.18 -0.5 589,915 - DvMF_0503 0.18 +0.7 589,916 - DvMF_0503 0.18 +0.1 589,938 + DvMF_0503 0.19 +0.0 590,129 - DvMF_0503 0.28 -0.2 590,156 + DvMF_0503 0.30 -0.2 590,231 + DvMF_0503 0.33 -0.0 590,400 + DvMF_0503 0.41 +0.1 590,418 - DvMF_0503 0.42 +0.6 590,684 + DvMF_0503 0.55 +0.0 590,692 - DvMF_0503 0.55 +0.0 590,696 + DvMF_0503 0.55 -0.1 590,783 - DvMF_0503 0.60 +0.1 590,925 - DvMF_0503 0.66 -0.5 591,161 - DvMF_0503 0.78 -0.4 591,292 - DvMF_0503 0.84 -0.2 591,376 - DvMF_0503 0.88 +0.1 591,441 + +0.2 591,509 - -0.2 591,548 - -0.0 591,701 - -0.1
Or see this region's nucleotide sequence