Experiment: MoYLS4 with Carbenicillin 0.0468 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0368 and DvMF_0369 are separated by 734 nucleotides DvMF_0369 and DvMF_0370 are separated by 303 nucleotides
DvMF_0368: DvMF_0368 - hypothetical protein (RefSeq), at 433,127 to 433,771
_0368
DvMF_0369: DvMF_0369 - pseudouridine synthase (RefSeq), at 434,506 to 435,261
_0369
DvMF_0370: DvMF_0370 - outer membrane lipoprotein carrier protein LolA (RefSeq), at 435,565 to 436,266
_0370
Position (kb) 434
435
436 Strain fitness (log2 ratio) -2
-1
0
1 at 433.539 kb on + strand, within DvMF_0368 at 433.607 kb on - strand, within DvMF_0368 at 433.612 kb on - strand, within DvMF_0368 at 433.646 kb on - strand, within DvMF_0368 at 433.673 kb on - strand, within DvMF_0368 at 433.711 kb on - strand at 433.853 kb on + strand at 433.907 kb on + strand at 434.045 kb on + strand at 434.076 kb on + strand at 434.102 kb on - strand at 434.104 kb on - strand at 434.371 kb on - strand at 434.589 kb on + strand, within DvMF_0369 at 434.590 kb on - strand, within DvMF_0369 at 434.635 kb on - strand, within DvMF_0369 at 434.635 kb on - strand, within DvMF_0369 at 434.642 kb on + strand, within DvMF_0369 at 434.790 kb on - strand, within DvMF_0369 at 434.790 kb on - strand, within DvMF_0369 at 434.828 kb on - strand, within DvMF_0369 at 434.911 kb on + strand, within DvMF_0369 at 434.944 kb on + strand, within DvMF_0369 at 434.944 kb on - strand, within DvMF_0369 at 434.989 kb on + strand, within DvMF_0369 at 434.998 kb on - strand, within DvMF_0369 at 435.186 kb on + strand at 435.229 kb on + strand at 435.237 kb on - strand at 435.332 kb on - strand at 435.496 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0468 mg/ml remove 433,539 + DvMF_0368 0.64 -0.2 433,607 - DvMF_0368 0.74 -0.0 433,612 - DvMF_0368 0.75 -0.4 433,646 - DvMF_0368 0.80 -0.6 433,673 - DvMF_0368 0.85 -0.9 433,711 - -0.5 433,853 + -0.4 433,907 + +0.6 434,045 + -0.2 434,076 + -0.6 434,102 - -0.3 434,104 - -0.6 434,371 - -0.5 434,589 + DvMF_0369 0.11 -0.7 434,590 - DvMF_0369 0.11 -1.3 434,635 - DvMF_0369 0.17 -0.3 434,635 - DvMF_0369 0.17 -0.6 434,642 + DvMF_0369 0.18 -1.1 434,790 - DvMF_0369 0.38 -0.9 434,790 - DvMF_0369 0.38 -0.7 434,828 - DvMF_0369 0.43 -0.8 434,911 + DvMF_0369 0.54 -0.5 434,944 + DvMF_0369 0.58 -1.1 434,944 - DvMF_0369 0.58 -1.0 434,989 + DvMF_0369 0.64 -0.7 434,998 - DvMF_0369 0.65 -2.4 435,186 + -1.2 435,229 + +0.0 435,237 - -0.3 435,332 - -0.2 435,496 + -0.3
Or see this region's nucleotide sequence