Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0002

Experiment: MoYLS4 with Carbenicillin 0.0468 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0001 and DvMF_0002 are separated by 270 nucleotidesDvMF_0002 and DvMF_0003 are separated by 257 nucleotides DvMF_0001: DvMF_0001 - chromosomal replication initiator protein DnaA (RefSeq), at 4 to 1,500 _0001 DvMF_0002: DvMF_0002 - transcriptional regulator, XRE family (RefSeq), at 1,771 to 2,325 _0002 DvMF_0003: DvMF_0003 - AMP-dependent synthetase and ligase (RefSeq), at 2,583 to 4,256 _0003 Position (kb) 1 2 3Strain fitness (log2 ratio) -1 0 1at 1.605 kb on - strandat 1.819 kb on + strandat 1.960 kb on - strand, within DvMF_0002at 2.008 kb on - strand, within DvMF_0002at 2.621 kb on - strandat 2.909 kb on + strand, within DvMF_0003at 2.935 kb on + strand, within DvMF_0003at 2.937 kb on + strand, within DvMF_0003at 2.943 kb on - strand, within DvMF_0003at 3.026 kb on + strand, within DvMF_0003at 3.040 kb on + strand, within DvMF_0003at 3.238 kb on + strand, within DvMF_0003at 3.244 kb on - strand, within DvMF_0003at 3.301 kb on + strand, within DvMF_0003

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0468 mg/ml
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1,605 - -0.2
1,819 + +0.3
1,960 - DvMF_0002 0.34 +0.3
2,008 - DvMF_0002 0.43 +0.3
2,621 - -0.3
2,909 + DvMF_0003 0.19 -0.7
2,935 + DvMF_0003 0.21 -0.2
2,937 + DvMF_0003 0.21 -0.0
2,943 - DvMF_0003 0.22 +0.0
3,026 + DvMF_0003 0.26 -0.1
3,040 + DvMF_0003 0.27 -0.4
3,238 + DvMF_0003 0.39 +0.0
3,244 - DvMF_0003 0.39 -0.0
3,301 + DvMF_0003 0.43 -0.7

Or see this region's nucleotide sequence