Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3558 and Shewana3_3559 are separated by 5 nucleotides Shewana3_3559 and Shewana3_3560 overlap by 17 nucleotides Shewana3_3560 and Shewana3_3561 are separated by 67 nucleotides
Shewana3_3558: Shewana3_3558 - hypothetical protein (RefSeq), at 4,265,889 to 4,266,881
_3558
Shewana3_3559: Shewana3_3559 - ubiquinol--cytochrome-c reductase (RefSeq), at 4,266,887 to 4,267,888
_3559
Shewana3_3560: Shewana3_3560 - radical SAM domain-containing protein (RefSeq), at 4,267,872 to 4,269,179
_3560
Shewana3_3561: Shewana3_3561 - no description, at 4,269,247 to 4,270,763
_3561
Position (kb) 4267
4268
4269
4270 Strain fitness (log2 ratio) -1
0
1 at 4266.889 kb on + strand at 4266.897 kb on - strand at 4266.934 kb on + strand at 4266.942 kb on - strand at 4267.251 kb on - strand, within Shewana3_3559 at 4267.453 kb on + strand, within Shewana3_3559 at 4267.453 kb on + strand, within Shewana3_3559 at 4267.453 kb on + strand, within Shewana3_3559 at 4267.453 kb on + strand, within Shewana3_3559 at 4267.461 kb on - strand, within Shewana3_3559 at 4267.505 kb on - strand, within Shewana3_3559 at 4267.512 kb on + strand, within Shewana3_3559 at 4267.512 kb on + strand, within Shewana3_3559 at 4267.629 kb on - strand, within Shewana3_3559 at 4267.758 kb on - strand, within Shewana3_3559 at 4267.758 kb on - strand, within Shewana3_3559 at 4267.758 kb on - strand, within Shewana3_3559 at 4267.758 kb on - strand, within Shewana3_3559 at 4267.793 kb on - strand at 4268.034 kb on - strand, within Shewana3_3560 at 4268.091 kb on + strand, within Shewana3_3560 at 4268.181 kb on - strand, within Shewana3_3560 at 4268.215 kb on + strand, within Shewana3_3560 at 4268.336 kb on + strand, within Shewana3_3560 at 4268.344 kb on - strand, within Shewana3_3560 at 4268.344 kb on - strand, within Shewana3_3560 at 4268.383 kb on + strand, within Shewana3_3560 at 4268.424 kb on - strand, within Shewana3_3560 at 4268.506 kb on + strand, within Shewana3_3560 at 4268.570 kb on + strand, within Shewana3_3560 at 4268.984 kb on + strand, within Shewana3_3560 at 4269.015 kb on - strand, within Shewana3_3560 at 4269.017 kb on + strand, within Shewana3_3560 at 4269.209 kb on + strand at 4269.291 kb on + strand at 4269.510 kb on + strand, within Shewana3_3561 at 4269.593 kb on + strand, within Shewana3_3561 at 4269.988 kb on - strand, within Shewana3_3561 at 4270.034 kb on - strand, within Shewana3_3561 at 4270.049 kb on + strand, within Shewana3_3561 at 4270.057 kb on - strand, within Shewana3_3561 at 4270.110 kb on - strand, within Shewana3_3561 at 4270.153 kb on + strand, within Shewana3_3561
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 4,266,889 + -0.1 4,266,897 - +0.3 4,266,934 + +1.2 4,266,942 - -0.5 4,267,251 - Shewana3_3559 0.36 -0.1 4,267,453 + Shewana3_3559 0.56 -0.2 4,267,453 + Shewana3_3559 0.56 +0.2 4,267,453 + Shewana3_3559 0.56 +0.1 4,267,453 + Shewana3_3559 0.56 +0.6 4,267,461 - Shewana3_3559 0.57 +0.9 4,267,505 - Shewana3_3559 0.62 +0.1 4,267,512 + Shewana3_3559 0.62 -1.3 4,267,512 + Shewana3_3559 0.62 -0.2 4,267,629 - Shewana3_3559 0.74 -0.1 4,267,758 - Shewana3_3559 0.87 +1.2 4,267,758 - Shewana3_3559 0.87 -1.1 4,267,758 - Shewana3_3559 0.87 +1.4 4,267,758 - Shewana3_3559 0.87 -0.2 4,267,793 - +1.4 4,268,034 - Shewana3_3560 0.12 -0.1 4,268,091 + Shewana3_3560 0.17 +1.3 4,268,181 - Shewana3_3560 0.24 +0.3 4,268,215 + Shewana3_3560 0.26 -0.9 4,268,336 + Shewana3_3560 0.35 -0.1 4,268,344 - Shewana3_3560 0.36 +1.0 4,268,344 - Shewana3_3560 0.36 +0.2 4,268,383 + Shewana3_3560 0.39 -1.5 4,268,424 - Shewana3_3560 0.42 -0.3 4,268,506 + Shewana3_3560 0.48 +0.9 4,268,570 + Shewana3_3560 0.53 -0.2 4,268,984 + Shewana3_3560 0.85 +0.7 4,269,015 - Shewana3_3560 0.87 +1.1 4,269,017 + Shewana3_3560 0.88 +0.4 4,269,209 + +0.5 4,269,291 + -0.2 4,269,510 + Shewana3_3561 0.17 +0.0 4,269,593 + Shewana3_3561 0.23 +0.1 4,269,988 - Shewana3_3561 0.49 +0.1 4,270,034 - Shewana3_3561 0.52 +0.6 4,270,049 + Shewana3_3561 0.53 -0.5 4,270,057 - Shewana3_3561 0.53 -0.6 4,270,110 - Shewana3_3561 0.57 +0.1 4,270,153 + Shewana3_3561 0.60 +0.1
Or see this region's nucleotide sequence