Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3435

Experiment: L-Serine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntnapH and Shewana3_3433 overlap by 4 nucleotidesShewana3_3433 and Shewana3_3434 are separated by 249 nucleotidesShewana3_3434 and Shewana3_3435 are separated by 94 nucleotidesShewana3_3435 and Shewana3_3436 are separated by 161 nucleotides Shewana3_3432: napH - quinol dehydrogenase membrane component (RefSeq), at 4,109,103 to 4,110,086 napH Shewana3_3433: Shewana3_3433 - periplasmic nitrate reductase subunit NapB (RefSeq), at 4,110,083 to 4,110,514 _3433 Shewana3_3434: Shewana3_3434 - hypothetical protein (RefSeq), at 4,110,764 to 4,110,916 _3434 Shewana3_3435: Shewana3_3435 - LysR family transcriptional regulator (RefSeq), at 4,111,011 to 4,111,898 _3435 Shewana3_3436: Shewana3_3436 - elongation factor G (RefSeq), at 4,112,060 to 4,114,153 _3436 Position (kb) 4111 4112Strain fitness (log2 ratio) -2 -1 0 1at 4110.159 kb on - strand, within Shewana3_3433at 4110.519 kb on + strandat 4110.646 kb on + strandat 4110.933 kb on - strandat 4110.948 kb on + strandat 4111.049 kb on - strandat 4111.149 kb on - strand, within Shewana3_3435at 4111.187 kb on + strand, within Shewana3_3435at 4111.187 kb on + strand, within Shewana3_3435at 4111.440 kb on - strand, within Shewana3_3435at 4111.481 kb on + strand, within Shewana3_3435at 4111.578 kb on + strand, within Shewana3_3435at 4111.930 kb on + strandat 4111.930 kb on + strandat 4111.930 kb on + strandat 4111.930 kb on + strandat 4111.938 kb on - strandat 4111.938 kb on - strandat 4111.953 kb on + strandat 4111.953 kb on + strandat 4111.953 kb on + strandat 4111.961 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
remove
4,110,159 - Shewana3_3433 0.18 +0.8
4,110,519 + -0.2
4,110,646 + +0.6
4,110,933 - -0.2
4,110,948 + -0.0
4,111,049 - +0.7
4,111,149 - Shewana3_3435 0.16 -0.7
4,111,187 + Shewana3_3435 0.20 +0.6
4,111,187 + Shewana3_3435 0.20 +1.1
4,111,440 - Shewana3_3435 0.48 -0.4
4,111,481 + Shewana3_3435 0.53 -1.2
4,111,578 + Shewana3_3435 0.64 +0.9
4,111,930 + -0.5
4,111,930 + +0.1
4,111,930 + -0.5
4,111,930 + -2.1
4,111,938 - -0.2
4,111,938 - +0.6
4,111,953 + -0.0
4,111,953 + +0.1
4,111,953 + +1.4
4,111,961 - -0.8

Or see this region's nucleotide sequence