Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt napH and Shewana3_3433 overlap by 4 nucleotides Shewana3_3433 and Shewana3_3434 are separated by 249 nucleotides Shewana3_3434 and Shewana3_3435 are separated by 94 nucleotides Shewana3_3435 and Shewana3_3436 are separated by 161 nucleotides
Shewana3_3432: napH - quinol dehydrogenase membrane component (RefSeq), at 4,109,103 to 4,110,086
napH
Shewana3_3433: Shewana3_3433 - periplasmic nitrate reductase subunit NapB (RefSeq), at 4,110,083 to 4,110,514
_3433
Shewana3_3434: Shewana3_3434 - hypothetical protein (RefSeq), at 4,110,764 to 4,110,916
_3434
Shewana3_3435: Shewana3_3435 - LysR family transcriptional regulator (RefSeq), at 4,111,011 to 4,111,898
_3435
Shewana3_3436: Shewana3_3436 - elongation factor G (RefSeq), at 4,112,060 to 4,114,153
_3436
Position (kb)
4111
4112 Strain fitness (log2 ratio)
-2
-1
0
1 at 4110.159 kb on - strand, within Shewana3_3433 at 4110.519 kb on + strand at 4110.646 kb on + strand at 4110.933 kb on - strand at 4110.948 kb on + strand at 4111.049 kb on - strand at 4111.149 kb on - strand, within Shewana3_3435 at 4111.187 kb on + strand, within Shewana3_3435 at 4111.187 kb on + strand, within Shewana3_3435 at 4111.440 kb on - strand, within Shewana3_3435 at 4111.481 kb on + strand, within Shewana3_3435 at 4111.578 kb on + strand, within Shewana3_3435 at 4111.930 kb on + strand at 4111.930 kb on + strand at 4111.930 kb on + strand at 4111.930 kb on + strand at 4111.938 kb on - strand at 4111.938 kb on - strand at 4111.953 kb on + strand at 4111.953 kb on + strand at 4111.953 kb on + strand at 4111.961 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 4,110,159 - Shewana3_3433 0.18 +0.8 4,110,519 + -0.2 4,110,646 + +0.6 4,110,933 - -0.2 4,110,948 + -0.0 4,111,049 - +0.7 4,111,149 - Shewana3_3435 0.16 -0.7 4,111,187 + Shewana3_3435 0.20 +0.6 4,111,187 + Shewana3_3435 0.20 +1.1 4,111,440 - Shewana3_3435 0.48 -0.4 4,111,481 + Shewana3_3435 0.53 -1.2 4,111,578 + Shewana3_3435 0.64 +0.9 4,111,930 + -0.5 4,111,930 + +0.1 4,111,930 + -0.5 4,111,930 + -2.1 4,111,938 - -0.2 4,111,938 - +0.6 4,111,953 + -0.0 4,111,953 + +0.1 4,111,953 + +1.4 4,111,961 - -0.8
Or see this region's nucleotide sequence