Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2830

Experiment: L-Serine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_2828 and Shewana3_2829 overlap by 8 nucleotidesShewana3_2829 and Shewana3_2830 are separated by 144 nucleotidesShewana3_2830 and Shewana3_2831 are separated by 49 nucleotidesShewana3_2831 and Shewana3_2832 are separated by 147 nucleotidesShewana3_2832 and Shewana3_2833 overlap by 1 nucleotides Shewana3_2828: Shewana3_2828 - hypothetical protein (RefSeq), at 3,377,666 to 3,377,971 _2828 Shewana3_2829: Shewana3_2829 - GCN5-related N-acetyltransferase (RefSeq), at 3,377,964 to 3,378,602 _2829 Shewana3_2830: Shewana3_2830 - hypothetical protein (RefSeq), at 3,378,747 to 3,378,980 _2830 Shewana3_2831: Shewana3_2831 - hypothetical protein (RefSeq), at 3,379,030 to 3,379,428 _2831 Shewana3_2832: Shewana3_2832 - hypothetical protein (RefSeq), at 3,379,576 to 3,379,959 _2832 Shewana3_2833: Shewana3_2833 - hypothetical protein (RefSeq), at 3,379,959 to 3,380,732 _2833 Position (kb) 3378 3379Strain fitness (log2 ratio) -2 -1 0 1at 3378.071 kb on - strand, within Shewana3_2829at 3378.111 kb on - strand, within Shewana3_2829at 3378.343 kb on - strand, within Shewana3_2829at 3378.517 kb on + strand, within Shewana3_2829at 3378.561 kb on + strandat 3378.934 kb on + strand, within Shewana3_2830at 3378.991 kb on - strandat 3379.057 kb on - strandat 3379.071 kb on - strand, within Shewana3_2831at 3379.105 kb on - strand, within Shewana3_2831at 3379.251 kb on + strand, within Shewana3_2831at 3379.259 kb on - strand, within Shewana3_2831at 3379.365 kb on + strand, within Shewana3_2831at 3379.615 kb on + strand, within Shewana3_2832at 3379.640 kb on + strand, within Shewana3_2832at 3379.827 kb on + strand, within Shewana3_2832at 3379.954 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
remove
3,378,071 - Shewana3_2829 0.17 -1.0
3,378,111 - Shewana3_2829 0.23 +0.9
3,378,343 - Shewana3_2829 0.59 -0.3
3,378,517 + Shewana3_2829 0.87 +0.3
3,378,561 + -0.0
3,378,934 + Shewana3_2830 0.80 -1.7
3,378,991 - +0.1
3,379,057 - +0.2
3,379,071 - Shewana3_2831 0.10 -0.4
3,379,105 - Shewana3_2831 0.19 -0.5
3,379,251 + Shewana3_2831 0.55 -0.6
3,379,259 - Shewana3_2831 0.57 -0.9
3,379,365 + Shewana3_2831 0.84 +0.6
3,379,615 + Shewana3_2832 0.10 +0.2
3,379,640 + Shewana3_2832 0.17 -2.5
3,379,827 + Shewana3_2832 0.65 +0.8
3,379,954 + +0.7

Or see this region's nucleotide sequence