Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2731

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2729 and Shewana3_2730 are separated by 79 nucleotidesShewana3_2730 and Shewana3_2731 are separated by 410 nucleotidesShewana3_2731 and Shewana3_2732 are separated by 127 nucleotidesShewana3_2732 and Shewana3_2733 are separated by 33 nucleotides Shewana3_2729: Shewana3_2729 - hypothetical protein (RefSeq), at 3,259,609 to 3,260,208 _2729 Shewana3_2730: Shewana3_2730 - hypothetical protein (RefSeq), at 3,260,288 to 3,260,740 _2730 Shewana3_2731: Shewana3_2731 - transcriptional regulator PhoU (RefSeq), at 3,261,151 to 3,261,861 _2731 Shewana3_2732: Shewana3_2732 - phosphate ABC transporter, ATPase subunit (RefSeq), at 3,261,989 to 3,262,807 _2732 Shewana3_2733: Shewana3_2733 - phosphate ABC transporter, inner membrane subunit PstA (RefSeq), at 3,262,841 to 3,264,499 _2733 Position (kb) 3261 3262Strain fitness (log2 ratio) -1 0 1at 3260.247 kb on + strandat 3260.255 kb on - strandat 3260.905 kb on - strandat 3261.878 kb on - strandat 3261.930 kb on - strandat 3261.930 kb on - strandat 3261.930 kb on - strandat 3262.169 kb on - strand, within Shewana3_2732at 3262.599 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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3,260,247 + -1.0
3,260,255 - +0.5
3,260,905 - -0.5
3,261,878 - +0.9
3,261,930 - -0.0
3,261,930 - +0.3
3,261,930 - -0.5
3,262,169 - Shewana3_2732 0.22 -1.7
3,262,599 - +1.7

Or see this region's nucleotide sequence