Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2684 and Shewana3_2685 are separated by 58 nucleotides Shewana3_2685 and Shewana3_2686 are separated by 242 nucleotides
Shewana3_2684: Shewana3_2684 - gluconate transporter (RefSeq), at 3,209,402 to 3,210,760
_2684
Shewana3_2685: Shewana3_2685 - glycerate kinase (RefSeq), at 3,210,819 to 3,211,964
_2685
Shewana3_2686: Shewana3_2686 - pyridoxal-dependent decarboxylase (RefSeq), at 3,212,207 to 3,213,856
_2686
Position (kb)
3210
3211
3212 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3209.867 kb on - strand, within Shewana3_2684 at 3209.882 kb on - strand, within Shewana3_2684 at 3210.013 kb on - strand, within Shewana3_2684 at 3210.096 kb on - strand, within Shewana3_2684 at 3210.439 kb on - strand, within Shewana3_2684 at 3210.525 kb on + strand, within Shewana3_2684 at 3210.663 kb on + strand at 3210.671 kb on - strand at 3210.717 kb on + strand at 3210.717 kb on + strand at 3210.740 kb on - strand at 3210.744 kb on + strand at 3210.745 kb on - strand at 3210.870 kb on + strand at 3211.076 kb on - strand, within Shewana3_2685 at 3211.110 kb on + strand, within Shewana3_2685 at 3211.110 kb on + strand, within Shewana3_2685 at 3211.118 kb on - strand, within Shewana3_2685 at 3211.118 kb on - strand, within Shewana3_2685 at 3211.178 kb on + strand, within Shewana3_2685 at 3211.178 kb on + strand, within Shewana3_2685 at 3211.188 kb on + strand, within Shewana3_2685 at 3211.201 kb on + strand, within Shewana3_2685 at 3211.395 kb on - strand, within Shewana3_2685 at 3211.395 kb on - strand, within Shewana3_2685 at 3211.416 kb on - strand, within Shewana3_2685 at 3211.497 kb on - strand, within Shewana3_2685 at 3211.508 kb on - strand, within Shewana3_2685 at 3211.590 kb on - strand, within Shewana3_2685 at 3211.651 kb on + strand, within Shewana3_2685 at 3211.907 kb on - strand at 3211.913 kb on + strand at 3211.913 kb on + strand at 3212.001 kb on - strand at 3212.019 kb on - strand at 3212.136 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 3,209,867 - Shewana3_2684 0.34 +1.9 3,209,882 - Shewana3_2684 0.35 +1.0 3,210,013 - Shewana3_2684 0.45 +0.5 3,210,096 - Shewana3_2684 0.51 +0.2 3,210,439 - Shewana3_2684 0.76 +1.6 3,210,525 + Shewana3_2684 0.83 +0.2 3,210,663 + +1.7 3,210,671 - +0.8 3,210,717 + -0.1 3,210,717 + -0.2 3,210,740 - -0.3 3,210,744 + -0.3 3,210,745 - +0.7 3,210,870 + +0.2 3,211,076 - Shewana3_2685 0.22 -1.1 3,211,110 + Shewana3_2685 0.25 +0.1 3,211,110 + Shewana3_2685 0.25 -1.6 3,211,118 - Shewana3_2685 0.26 -0.3 3,211,118 - Shewana3_2685 0.26 -0.7 3,211,178 + Shewana3_2685 0.31 -1.2 3,211,178 + Shewana3_2685 0.31 -0.1 3,211,188 + Shewana3_2685 0.32 -0.2 3,211,201 + Shewana3_2685 0.33 +0.4 3,211,395 - Shewana3_2685 0.50 -0.2 3,211,395 - Shewana3_2685 0.50 -1.8 3,211,416 - Shewana3_2685 0.52 +0.7 3,211,497 - Shewana3_2685 0.59 -1.0 3,211,508 - Shewana3_2685 0.60 -0.1 3,211,590 - Shewana3_2685 0.67 +0.1 3,211,651 + Shewana3_2685 0.73 -0.7 3,211,907 - +0.5 3,211,913 + +0.3 3,211,913 + -0.6 3,212,001 - +0.5 3,212,019 - -0.8 3,212,136 - +0.7
Or see this region's nucleotide sequence