Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2685

Experiment: L-Serine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_2684 and Shewana3_2685 are separated by 58 nucleotidesShewana3_2685 and Shewana3_2686 are separated by 242 nucleotides Shewana3_2684: Shewana3_2684 - gluconate transporter (RefSeq), at 3,209,402 to 3,210,760 _2684 Shewana3_2685: Shewana3_2685 - glycerate kinase (RefSeq), at 3,210,819 to 3,211,964 _2685 Shewana3_2686: Shewana3_2686 - pyridoxal-dependent decarboxylase (RefSeq), at 3,212,207 to 3,213,856 _2686 Position (kb) 3210 3211 3212Strain fitness (log2 ratio) -2 -1 0 1 2at 3209.867 kb on - strand, within Shewana3_2684at 3209.882 kb on - strand, within Shewana3_2684at 3210.013 kb on - strand, within Shewana3_2684at 3210.096 kb on - strand, within Shewana3_2684at 3210.439 kb on - strand, within Shewana3_2684at 3210.525 kb on + strand, within Shewana3_2684at 3210.663 kb on + strandat 3210.671 kb on - strandat 3210.717 kb on + strandat 3210.717 kb on + strandat 3210.740 kb on - strandat 3210.744 kb on + strandat 3210.745 kb on - strandat 3210.870 kb on + strandat 3211.076 kb on - strand, within Shewana3_2685at 3211.110 kb on + strand, within Shewana3_2685at 3211.110 kb on + strand, within Shewana3_2685at 3211.118 kb on - strand, within Shewana3_2685at 3211.118 kb on - strand, within Shewana3_2685at 3211.178 kb on + strand, within Shewana3_2685at 3211.178 kb on + strand, within Shewana3_2685at 3211.188 kb on + strand, within Shewana3_2685at 3211.201 kb on + strand, within Shewana3_2685at 3211.395 kb on - strand, within Shewana3_2685at 3211.395 kb on - strand, within Shewana3_2685at 3211.416 kb on - strand, within Shewana3_2685at 3211.497 kb on - strand, within Shewana3_2685at 3211.508 kb on - strand, within Shewana3_2685at 3211.590 kb on - strand, within Shewana3_2685at 3211.651 kb on + strand, within Shewana3_2685at 3211.907 kb on - strandat 3211.913 kb on + strandat 3211.913 kb on + strandat 3212.001 kb on - strandat 3212.019 kb on - strandat 3212.136 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
remove
3,209,867 - Shewana3_2684 0.34 +1.9
3,209,882 - Shewana3_2684 0.35 +1.0
3,210,013 - Shewana3_2684 0.45 +0.5
3,210,096 - Shewana3_2684 0.51 +0.2
3,210,439 - Shewana3_2684 0.76 +1.6
3,210,525 + Shewana3_2684 0.83 +0.2
3,210,663 + +1.7
3,210,671 - +0.8
3,210,717 + -0.1
3,210,717 + -0.2
3,210,740 - -0.3
3,210,744 + -0.3
3,210,745 - +0.7
3,210,870 + +0.2
3,211,076 - Shewana3_2685 0.22 -1.1
3,211,110 + Shewana3_2685 0.25 +0.1
3,211,110 + Shewana3_2685 0.25 -1.6
3,211,118 - Shewana3_2685 0.26 -0.3
3,211,118 - Shewana3_2685 0.26 -0.7
3,211,178 + Shewana3_2685 0.31 -1.2
3,211,178 + Shewana3_2685 0.31 -0.1
3,211,188 + Shewana3_2685 0.32 -0.2
3,211,201 + Shewana3_2685 0.33 +0.4
3,211,395 - Shewana3_2685 0.50 -0.2
3,211,395 - Shewana3_2685 0.50 -1.8
3,211,416 - Shewana3_2685 0.52 +0.7
3,211,497 - Shewana3_2685 0.59 -1.0
3,211,508 - Shewana3_2685 0.60 -0.1
3,211,590 - Shewana3_2685 0.67 +0.1
3,211,651 + Shewana3_2685 0.73 -0.7
3,211,907 - +0.5
3,211,913 + +0.3
3,211,913 + -0.6
3,212,001 - +0.5
3,212,019 - -0.8
3,212,136 - +0.7

Or see this region's nucleotide sequence