Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2541 and Shewana3_2542 are separated by 370 nucleotides Shewana3_2542 and Shewana3_2543 are separated by 83 nucleotides
Shewana3_2541: Shewana3_2541 - alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen (RefSeq), at 3,037,766 to 3,038,371
_2541
Shewana3_2542: Shewana3_2542 - Na+/H+ antiporter NhaC (RefSeq), at 3,038,742 to 3,040,061
_2542
Shewana3_2543: Shewana3_2543 - diguanylate cyclase (RefSeq), at 3,040,145 to 3,041,566
_2543
Position (kb)
3038
3039
3040
3041 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3037.820 kb on + strand at 3037.984 kb on - strand, within Shewana3_2541 at 3038.166 kb on - strand, within Shewana3_2541 at 3038.171 kb on - strand, within Shewana3_2541 at 3038.192 kb on - strand, within Shewana3_2541 at 3038.305 kb on - strand, within Shewana3_2541 at 3038.315 kb on + strand at 3038.323 kb on - strand at 3038.576 kb on - strand at 3038.765 kb on + strand at 3038.816 kb on + strand at 3038.918 kb on + strand, within Shewana3_2542 at 3039.046 kb on + strand, within Shewana3_2542 at 3039.158 kb on + strand, within Shewana3_2542 at 3039.199 kb on + strand, within Shewana3_2542 at 3039.398 kb on - strand, within Shewana3_2542 at 3039.633 kb on + strand, within Shewana3_2542 at 3039.633 kb on + strand, within Shewana3_2542 at 3039.837 kb on + strand, within Shewana3_2542 at 3039.839 kb on - strand, within Shewana3_2542 at 3040.008 kb on - strand at 3040.008 kb on - strand at 3040.203 kb on + strand at 3040.203 kb on + strand at 3040.298 kb on - strand, within Shewana3_2543 at 3040.379 kb on + strand, within Shewana3_2543 at 3040.717 kb on + strand, within Shewana3_2543 at 3040.735 kb on - strand, within Shewana3_2543 at 3040.735 kb on - strand, within Shewana3_2543 at 3040.824 kb on - strand, within Shewana3_2543 at 3040.932 kb on + strand, within Shewana3_2543 at 3040.940 kb on - strand, within Shewana3_2543 at 3041.045 kb on + strand, within Shewana3_2543
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 3,037,820 + -1.1 3,037,984 - Shewana3_2541 0.36 -0.1 3,038,166 - Shewana3_2541 0.66 +0.7 3,038,171 - Shewana3_2541 0.67 +0.4 3,038,192 - Shewana3_2541 0.70 +2.0 3,038,305 - Shewana3_2541 0.89 +0.1 3,038,315 + +0.2 3,038,323 - +0.4 3,038,576 - +1.1 3,038,765 + +0.4 3,038,816 + -0.5 3,038,918 + Shewana3_2542 0.13 -0.6 3,039,046 + Shewana3_2542 0.23 +0.5 3,039,158 + Shewana3_2542 0.32 -0.1 3,039,199 + Shewana3_2542 0.35 -0.3 3,039,398 - Shewana3_2542 0.50 +0.3 3,039,633 + Shewana3_2542 0.68 +1.2 3,039,633 + Shewana3_2542 0.68 -0.4 3,039,837 + Shewana3_2542 0.83 +0.4 3,039,839 - Shewana3_2542 0.83 -1.1 3,040,008 - +0.7 3,040,008 - +0.2 3,040,203 + +0.5 3,040,203 + -0.1 3,040,298 - Shewana3_2543 0.11 +0.5 3,040,379 + Shewana3_2543 0.16 -0.3 3,040,717 + Shewana3_2543 0.40 -0.3 3,040,735 - Shewana3_2543 0.41 -1.0 3,040,735 - Shewana3_2543 0.41 +0.1 3,040,824 - Shewana3_2543 0.48 -0.3 3,040,932 + Shewana3_2543 0.55 -2.0 3,040,940 - Shewana3_2543 0.56 +0.4 3,041,045 + Shewana3_2543 0.63 +0.3
Or see this region's nucleotide sequence