Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1759

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1757 and Shewana3_1758 are separated by 60 nucleotidesShewana3_1758 and Shewana3_1759 are separated by 109 nucleotidesShewana3_1759 and metG are separated by 384 nucleotides Shewana3_1757: Shewana3_1757 - 17 kDa surface antigen (RefSeq), at 2,071,180 to 2,071,623 _1757 Shewana3_1758: Shewana3_1758 - hypothetical protein (RefSeq), at 2,071,684 to 2,072,436 _1758 Shewana3_1759: Shewana3_1759 - hypothetical protein (RefSeq), at 2,072,546 to 2,073,502 _1759 Shewana3_1760: metG - methionyl-tRNA synthetase (RefSeq), at 2,073,887 to 2,075,917 metG Position (kb) 2072 2073 2074Strain fitness (log2 ratio) -1 0 1 2at 2071.780 kb on + strand, within Shewana3_1758at 2071.795 kb on + strand, within Shewana3_1758at 2072.228 kb on - strand, within Shewana3_1758at 2072.421 kb on + strandat 2072.439 kb on - strandat 2072.485 kb on + strandat 2072.493 kb on - strandat 2072.544 kb on + strandat 2072.544 kb on + strandat 2072.544 kb on + strandat 2072.562 kb on - strandat 2072.599 kb on - strandat 2072.657 kb on + strand, within Shewana3_1759at 2072.725 kb on - strand, within Shewana3_1759at 2072.785 kb on + strand, within Shewana3_1759at 2072.894 kb on + strand, within Shewana3_1759at 2073.036 kb on - strand, within Shewana3_1759at 2073.172 kb on + strand, within Shewana3_1759at 2073.328 kb on - strand, within Shewana3_1759at 2073.427 kb on + strandat 2073.440 kb on + strandat 2073.661 kb on + strandat 2073.721 kb on + strandat 2074.195 kb on + strand, within metG

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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2,071,780 + Shewana3_1758 0.13 +0.5
2,071,795 + Shewana3_1758 0.15 +0.2
2,072,228 - Shewana3_1758 0.72 +2.3
2,072,421 + -0.1
2,072,439 - +0.4
2,072,485 + -0.1
2,072,493 - -1.2
2,072,544 + +0.5
2,072,544 + +0.3
2,072,544 + +0.0
2,072,562 - +0.4
2,072,599 - +1.3
2,072,657 + Shewana3_1759 0.12 -0.4
2,072,725 - Shewana3_1759 0.19 +1.5
2,072,785 + Shewana3_1759 0.25 +1.0
2,072,894 + Shewana3_1759 0.36 -0.3
2,073,036 - Shewana3_1759 0.51 +0.3
2,073,172 + Shewana3_1759 0.65 +1.9
2,073,328 - Shewana3_1759 0.82 +0.2
2,073,427 + +0.7
2,073,440 + -1.7
2,073,661 + +0.8
2,073,721 + +0.0
2,074,195 + metG Shewana3_1760 0.15 +0.1

Or see this region's nucleotide sequence