Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0887

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0885 and Shewana3_0886 overlap by 1 nucleotidesShewana3_0886 and Shewana3_0887 are separated by 184 nucleotidesShewana3_0887 and Shewana3_0888 are separated by 227 nucleotides Shewana3_0885: Shewana3_0885 - LrgA family protein (RefSeq), at 1,031,112 to 1,031,546 _0885 Shewana3_0886: Shewana3_0886 - LrgB family protein (RefSeq), at 1,031,546 to 1,032,280 _0886 Shewana3_0887: Shewana3_0887 - GCN5-related N-acetyltransferase (RefSeq), at 1,032,465 to 1,032,941 _0887 Shewana3_0888: Shewana3_0888 - carbon starvation protein CstA (RefSeq), at 1,033,169 to 1,034,644 _0888 Position (kb) 1032 1033Strain fitness (log2 ratio) -2 -1 0 1at 1031.561 kb on - strandat 1031.678 kb on + strand, within Shewana3_0886at 1031.879 kb on - strand, within Shewana3_0886at 1032.091 kb on + strand, within Shewana3_0886at 1032.127 kb on + strand, within Shewana3_0886at 1032.282 kb on + strandat 1032.388 kb on - strandat 1032.465 kb on - strandat 1032.530 kb on + strand, within Shewana3_0887at 1032.548 kb on + strand, within Shewana3_0887at 1032.765 kb on + strand, within Shewana3_0887at 1032.765 kb on + strand, within Shewana3_0887at 1032.799 kb on + strand, within Shewana3_0887at 1032.820 kb on + strand, within Shewana3_0887at 1032.838 kb on - strand, within Shewana3_0887at 1033.007 kb on - strandat 1033.076 kb on + strandat 1033.293 kb on + strandat 1033.398 kb on + strand, within Shewana3_0888at 1033.411 kb on + strand, within Shewana3_0888at 1033.567 kb on + strand, within Shewana3_0888at 1033.743 kb on - strand, within Shewana3_0888at 1033.743 kb on - strand, within Shewana3_0888

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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1,031,561 - -0.0
1,031,678 + Shewana3_0886 0.18 +0.1
1,031,879 - Shewana3_0886 0.45 +0.3
1,032,091 + Shewana3_0886 0.74 -0.8
1,032,127 + Shewana3_0886 0.79 +0.2
1,032,282 + +0.4
1,032,388 - +0.4
1,032,465 - -0.1
1,032,530 + Shewana3_0887 0.14 +0.5
1,032,548 + Shewana3_0887 0.17 +0.1
1,032,765 + Shewana3_0887 0.63 -0.3
1,032,765 + Shewana3_0887 0.63 +0.9
1,032,799 + Shewana3_0887 0.70 +0.3
1,032,820 + Shewana3_0887 0.74 +0.7
1,032,838 - Shewana3_0887 0.78 +0.8
1,033,007 - +0.4
1,033,076 + +0.1
1,033,293 + -0.2
1,033,398 + Shewana3_0888 0.16 -0.3
1,033,411 + Shewana3_0888 0.16 +0.1
1,033,567 + Shewana3_0888 0.27 -2.3
1,033,743 - Shewana3_0888 0.39 -0.6
1,033,743 - Shewana3_0888 0.39 -0.8

Or see this region's nucleotide sequence