Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0885 and Shewana3_0886 overlap by 1 nucleotides Shewana3_0886 and Shewana3_0887 are separated by 184 nucleotides Shewana3_0887 and Shewana3_0888 are separated by 227 nucleotides
Shewana3_0885: Shewana3_0885 - LrgA family protein (RefSeq), at 1,031,112 to 1,031,546
_0885
Shewana3_0886: Shewana3_0886 - LrgB family protein (RefSeq), at 1,031,546 to 1,032,280
_0886
Shewana3_0887: Shewana3_0887 - GCN5-related N-acetyltransferase (RefSeq), at 1,032,465 to 1,032,941
_0887
Shewana3_0888: Shewana3_0888 - carbon starvation protein CstA (RefSeq), at 1,033,169 to 1,034,644
_0888
Position (kb)
1032
1033 Strain fitness (log2 ratio)
-2
-1
0
1 at 1031.561 kb on - strand at 1031.678 kb on + strand, within Shewana3_0886 at 1031.879 kb on - strand, within Shewana3_0886 at 1032.091 kb on + strand, within Shewana3_0886 at 1032.127 kb on + strand, within Shewana3_0886 at 1032.282 kb on + strand at 1032.388 kb on - strand at 1032.465 kb on - strand at 1032.530 kb on + strand, within Shewana3_0887 at 1032.548 kb on + strand, within Shewana3_0887 at 1032.765 kb on + strand, within Shewana3_0887 at 1032.765 kb on + strand, within Shewana3_0887 at 1032.799 kb on + strand, within Shewana3_0887 at 1032.820 kb on + strand, within Shewana3_0887 at 1032.838 kb on - strand, within Shewana3_0887 at 1033.007 kb on - strand at 1033.076 kb on + strand at 1033.293 kb on + strand at 1033.398 kb on + strand, within Shewana3_0888 at 1033.411 kb on + strand, within Shewana3_0888 at 1033.567 kb on + strand, within Shewana3_0888 at 1033.743 kb on - strand, within Shewana3_0888 at 1033.743 kb on - strand, within Shewana3_0888
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 1,031,561 - -0.0 1,031,678 + Shewana3_0886 0.18 +0.1 1,031,879 - Shewana3_0886 0.45 +0.3 1,032,091 + Shewana3_0886 0.74 -0.8 1,032,127 + Shewana3_0886 0.79 +0.2 1,032,282 + +0.4 1,032,388 - +0.4 1,032,465 - -0.1 1,032,530 + Shewana3_0887 0.14 +0.5 1,032,548 + Shewana3_0887 0.17 +0.1 1,032,765 + Shewana3_0887 0.63 -0.3 1,032,765 + Shewana3_0887 0.63 +0.9 1,032,799 + Shewana3_0887 0.70 +0.3 1,032,820 + Shewana3_0887 0.74 +0.7 1,032,838 - Shewana3_0887 0.78 +0.8 1,033,007 - +0.4 1,033,076 + +0.1 1,033,293 + -0.2 1,033,398 + Shewana3_0888 0.16 -0.3 1,033,411 + Shewana3_0888 0.16 +0.1 1,033,567 + Shewana3_0888 0.27 -2.3 1,033,743 - Shewana3_0888 0.39 -0.6 1,033,743 - Shewana3_0888 0.39 -0.8
Or see this region's nucleotide sequence