Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0596

Experiment: L-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmutL and miaA are separated by 28 nucleotidesmiaA and Shewana3_0597 are separated by 92 nucleotidesShewana3_0597 and Shewana3_0598 are separated by 23 nucleotides Shewana3_0595: mutL - DNA mismatch repair protein (RefSeq), at 697,914 to 699,860 mutL Shewana3_0596: miaA - tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq), at 699,889 to 700,779 miaA Shewana3_0597: Shewana3_0597 - RNA-binding protein Hfq (RefSeq), at 700,872 to 701,144 _0597 Shewana3_0598: Shewana3_0598 - GTP-binding protein, HSR1-related (RefSeq), at 701,168 to 702,475 _0598 Position (kb) 699 700 701Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7 8 9at 698.956 kb on - strand, within mutLat 698.956 kb on - strand, within mutLat 698.977 kb on - strand, within mutLat 698.987 kb on + strand, within mutLat 698.987 kb on + strand, within mutLat 699.225 kb on + strand, within mutLat 699.253 kb on + strand, within mutLat 699.307 kb on - strand, within mutLat 699.317 kb on - strand, within mutLat 699.368 kb on - strand, within mutLat 699.539 kb on + strand, within mutLat 699.547 kb on - strand, within mutLat 699.687 kb on + strandat 699.722 kb on + strandat 700.004 kb on + strandat 701.053 kb on + strand, within Shewana3_0597at 701.275 kb on + strandat 701.290 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (C)
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698,956 - mutL Shewana3_0595 0.54 +0.9
698,956 - mutL Shewana3_0595 0.54 -0.0
698,977 - mutL Shewana3_0595 0.55 +0.5
698,987 + mutL Shewana3_0595 0.55 +9.5
698,987 + mutL Shewana3_0595 0.55 -0.0
699,225 + mutL Shewana3_0595 0.67 -0.8
699,253 + mutL Shewana3_0595 0.69 -0.4
699,307 - mutL Shewana3_0595 0.72 +0.8
699,317 - mutL Shewana3_0595 0.72 -0.0
699,368 - mutL Shewana3_0595 0.75 +0.4
699,539 + mutL Shewana3_0595 0.83 -0.4
699,547 - mutL Shewana3_0595 0.84 -0.1
699,687 + +0.8
699,722 + +1.5
700,004 + -0.7
701,053 + Shewana3_0597 0.66 +2.3
701,275 + +2.3
701,290 + +0.1

Or see this region's nucleotide sequence