Strain Fitness in Shewanella amazonensis SB2B around Sama_3458

Experiment: L-Glutamic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Glutamic
4,086,107	+		Sama_3456	0.74	-0.1
4,086,135	+		Sama_3456	0.78	-0.1
4,086,135	+		Sama_3456	0.78	-1.1
4,086,135	+		Sama_3456	0.78	+1.4
4,086,136	-		Sama_3456	0.78	+1.7
4,086,136	-		Sama_3456	0.78	-0.5
4,086,136	-		Sama_3456	0.78	+0.6
4,086,157	+		Sama_3456	0.80	-0.2
4,086,158	-		Sama_3456	0.81	-0.6
4,086,158	-		Sama_3456	0.81	+0.9
4,086,166	+		Sama_3456	0.82	-0.5
4,086,167	-		Sama_3456	0.82	+0.5
4,086,220	+		Sama_3456	0.89	+0.5
4,086,220	+		Sama_3456	0.89	-0.5
4,086,221	-		Sama_3456	0.89	-1.1
4,086,287	+				+0.2
4,086,288	-				-0.3
4,086,288	-				-0.2
4,086,288	-				+0.4
4,086,288	-				-0.4
4,086,304	+				+0.8
4,086,438	-				+0.1
4,086,441	+				+0.6
4,086,441	+				-0.6
4,086,441	+				+0.6
4,086,441	+				-1.1
4,086,441	+				+0.1
4,086,441	+				+0.1
4,086,441	+				-0.1
4,086,441	+				+1.5
4,086,441	+				-0.9
4,086,441	+				+0.4
4,086,441	+				-0.6
4,086,441	+				-0.4
4,086,441	+				-0.1
4,086,442	-				-0.4
4,086,442	-				-0.8
4,086,442	-				+0.1
4,086,442	-				+0.6
4,086,442	-				+0.9
4,086,442	-				+0.4
4,086,442	-				+0.7
4,086,442	-				-0.2
4,086,442	-				-0.6
4,086,442	-				-0.4
4,086,443	+				+0.4
4,086,443	+				+1.6
4,086,444	-				+0.9
4,086,460	-				-0.4
4,086,460	-				-0.1
4,086,460	-				-1.0
4,086,506	-				-0.5
4,086,553	+		Sama_3457	0.12	-1.4
4,086,560	+		Sama_3457	0.13	+0.4
4,086,560	+		Sama_3457	0.13	+1.2
4,086,560	+		Sama_3457	0.13	-0.2
4,086,561	-		Sama_3457	0.13	-0.9
4,086,561	-		Sama_3457	0.13	+0.4
4,086,561	-		Sama_3457	0.13	-0.1
4,086,587	+		Sama_3457	0.18	+1.1
4,086,587	+		Sama_3457	0.18	+0.2
4,086,588	-		Sama_3457	0.18	-0.8
4,086,622	+		Sama_3457	0.23	+0.4
4,086,623	-		Sama_3457	0.24	+0.1
4,086,623	-		Sama_3457	0.24	-0.6
4,086,623	-		Sama_3457	0.24	+0.8
4,086,625	+		Sama_3457	0.24	-0.4
4,086,626	-		Sama_3457	0.24	+1.5
4,086,626	-		Sama_3457	0.24	+0.2
4,086,626	-		Sama_3457	0.24	+0.9
4,086,626	-		Sama_3457	0.24	-0.4
4,086,626	-		Sama_3457	0.24	+0.6
4,086,626	-		Sama_3457	0.24	-0.2
4,086,691	-		Sama_3457	0.35	-0.5
4,086,744	+		Sama_3457	0.44	-0.5
4,086,744	+		Sama_3457	0.44	+0.6
4,086,745	-		Sama_3457	0.44	+0.1
4,086,759	+		Sama_3457	0.46	-0.9
4,086,759	+		Sama_3457	0.46	+0.5
4,086,759	+		Sama_3457	0.46	-0.4
4,086,759	+		Sama_3457	0.46	-0.4
4,086,759	+		Sama_3457	0.46	+1.1
4,086,759	+		Sama_3457	0.46	+0.6
4,086,759	+		Sama_3457	0.46	+0.4
4,086,759	+		Sama_3457	0.46	-1.1
4,086,760	-		Sama_3457	0.46	+0.5
4,086,760	-		Sama_3457	0.46	-0.3
4,086,760	-		Sama_3457	0.46	-0.1
4,086,760	-		Sama_3457	0.46	+0.6
4,086,760	-		Sama_3457	0.46	-1.0
4,086,760	-		Sama_3457	0.46	-0.3
4,086,760	-		Sama_3457	0.46	-0.9
4,086,775	-		Sama_3457	0.49	+0.3
4,086,809	+		Sama_3457	0.54	-0.6
4,086,809	+		Sama_3457	0.54	-0.7
4,086,810	-		Sama_3457	0.54	+0.0
4,086,810	-		Sama_3457	0.54	+0.5
4,086,810	-		Sama_3457	0.54	-0.3
4,086,810	-		Sama_3457	0.54	-2.6
4,086,810	-		Sama_3457	0.54	-0.6
4,086,810	-		Sama_3457	0.54	-1.4
4,086,810	-		Sama_3457	0.54	-1.5
4,086,828	+		Sama_3457	0.57	+0.0
4,086,829	-		Sama_3457	0.57	-0.6
4,086,845	+		Sama_3457	0.60	-0.8
4,086,845	+		Sama_3457	0.60	+0.5
4,086,845	+		Sama_3457	0.60	-0.9
4,086,846	-		Sama_3457	0.60	-0.4
4,087,001	+		Sama_3457	0.86	+0.9
4,087,001	+		Sama_3457	0.86	+0.1
4,087,002	-		Sama_3457	0.86	-0.1
4,087,037	-				+1.9
4,087,037	-				+1.2
4,087,042	+				+0.6
4,087,085	+				+0.5
4,087,104	+				-1.4
4,087,104	+				-0.1
4,087,105	-				+0.1
4,087,105	-				+1.4
4,087,105	-				+0.9
4,087,169	+				-0.0
4,087,169	+				-0.4
4,087,170	-				-0.5
4,087,170	-				+1.2
4,087,170	-				-0.9
4,087,176	+				-0.2
4,087,176	+				-0.4
4,087,176	+				-0.2
4,087,176	+				-0.3
4,087,177	-				-0.5
4,087,177	-				-0.6
4,087,177	-				-0.5
4,087,177	-				-0.2
4,087,177	-				-0.8
4,087,255	+		Sama_3458	0.14	-0.6
4,087,286	+		Sama_3458	0.16	-0.4
4,087,286	+		Sama_3458	0.16	-0.6
4,087,286	+		Sama_3458	0.16	+0.4
4,087,286	+		Sama_3458	0.16	-1.5
4,087,286	+		Sama_3458	0.16	+0.5
4,087,286	+		Sama_3458	0.16	-1.1
4,087,286	+		Sama_3458	0.16	+0.7
4,087,286	+		Sama_3458	0.16	-0.9
4,087,287	-		Sama_3458	0.16	+1.4
4,087,287	-		Sama_3458	0.16	+1.2
4,087,287	-		Sama_3458	0.16	+0.5
4,087,287	-		Sama_3458	0.16	-0.1
4,087,287	-		Sama_3458	0.16	-0.6
4,087,287	-		Sama_3458	0.16	-0.3
4,087,287	-		Sama_3458	0.16	-1.1
4,087,287	-		Sama_3458	0.16	-2.9
4,087,287	-		Sama_3458	0.16	+2.9
4,087,287	-		Sama_3458	0.16	-0.4
4,087,287	-		Sama_3458	0.16	-1.6
4,087,287	-		Sama_3458	0.16	-0.5
4,087,290	+		Sama_3458	0.16	-0.2
4,087,290	+		Sama_3458	0.16	-1.2
4,087,291	-		Sama_3458	0.16	+0.0
4,087,291	-		Sama_3458	0.16	-1.0
4,087,291	-		Sama_3458	0.16	-0.1
4,087,291	-		Sama_3458	0.16	-1.4
4,087,291	-		Sama_3458	0.16	-1.3
4,087,291	-		Sama_3458	0.16	-1.4
4,087,291	-		Sama_3458	0.16	-0.1
4,087,320	+		Sama_3458	0.19	-1.2
4,087,321	-		Sama_3458	0.19	+0.2
4,087,387	-		Sama_3458	0.24	-1.3
4,087,409	-		Sama_3458	0.26	-1.0
4,087,436	+		Sama_3458	0.28	-0.4
4,087,437	-		Sama_3458	0.28	-0.4
4,087,496	+		Sama_3458	0.33	-0.9
4,087,497	-		Sama_3458	0.33	-0.2
4,087,497	-		Sama_3458	0.33	-0.9
4,087,497	-		Sama_3458	0.33	-1.4
4,087,497	-		Sama_3458	0.33	-2.1
4,087,497	-		Sama_3458	0.33	-1.0
4,087,497	-		Sama_3458	0.33	-0.6
4,087,504	+		Sama_3458	0.33	-0.3
4,087,505	-		Sama_3458	0.33	+0.3
4,087,505	-		Sama_3458	0.33	-0.9
4,087,505	-		Sama_3458	0.33	+0.9
4,087,505	-		Sama_3458	0.33	-0.1
4,087,535	-		Sama_3458	0.36	-0.4
4,087,544	-		Sama_3458	0.37	-0.9
4,087,624	+		Sama_3458	0.43	+0.9
4,087,625	-		Sama_3458	0.43	+1.9
4,087,625	-		Sama_3458	0.43	+0.6
4,087,625	-		Sama_3458	0.43	-2.1
4,087,643	+		Sama_3458	0.44	+0.9
4,087,643	+		Sama_3458	0.44	-0.1
4,087,643	+		Sama_3458	0.44	-1.3
4,087,643	+		Sama_3458	0.44	-0.9
4,087,643	+		Sama_3458	0.44	+0.2
4,087,644	-		Sama_3458	0.45	-0.6
4,087,851	+		Sama_3458	0.61	-0.5
4,087,851	+		Sama_3458	0.61	-0.4
4,087,852	-		Sama_3458	0.61	+0.1
4,087,876	+		Sama_3458	0.63	-0.4
4,087,877	-		Sama_3458	0.63	-1.1
4,087,951	+		Sama_3458	0.69	+1.2
4,087,951	+		Sama_3458	0.69	+1.8
4,087,951	+		Sama_3458	0.69	-0.6
4,087,952	-		Sama_3458	0.69	-0.1
4,087,952	-		Sama_3458	0.69	+1.4
4,087,952	-		Sama_3458	0.69	+0.0
4,087,972	+		Sama_3458	0.71	+0.1
4,087,973	-		Sama_3458	0.71	+0.1
4,087,973	-		Sama_3458	0.71	-0.9
4,087,973	-		Sama_3458	0.71	-0.9
4,087,973	-		Sama_3458	0.71	-2.2
4,088,050	-		Sama_3458	0.77	-2.4
4,088,050	-		Sama_3458	0.77	-0.4
4,088,050	-		Sama_3458	0.77	+0.8
4,088,070	+		Sama_3458	0.78	+0.1
4,088,070	+		Sama_3458	0.78	-1.2
4,088,080	-		Sama_3458	0.79	-0.4
4,088,184	+		Sama_3458	0.88	-0.2
4,088,185	-		Sama_3458	0.88	+0.4
4,088,259	+				-0.2
4,088,260	-				-0.9
4,088,260	-				-2.5
4,088,278	+				+0.5
4,088,278	+				+0.6
4,088,331	+				-0.4
4,088,331	+				-1.5
4,088,331	+				+0.6
4,088,331	+				+0.1
4,088,331	+				-1.2
4,088,331	+				-1.5
4,088,331	+				-0.0
4,088,331	+				-1.7
4,088,331	+				+1.2
4,088,332	-				+2.0
4,088,332	-				+0.1
4,088,332	-				-0.6
4,088,332	-				-1.0
4,088,332	-				+0.1
4,088,332	-				-0.6
4,088,332	-				+1.7
4,088,345	+				-1.0
4,088,346	-				+1.1
4,088,350	+				-0.2
4,088,350	+				-0.0
4,088,350	+				-0.4
4,088,351	-				+0.4
4,088,351	-				-1.2
4,088,351	-				+0.4
4,088,375	+				+0.3
4,088,375	+				-1.6
4,088,376	-				-0.2
4,088,376	-				+0.1
4,088,376	-				+0.1
4,088,376	-				+0.6
4,088,376	-				-0.3
4,088,376	-				-0.7
4,088,419	+				+0.4
4,088,419	+				-0.6
4,088,419	+				+0.2
4,088,419	+				-1.0
4,088,419	+				+2.0
4,088,419	+				-0.9
4,088,419	+				-1.4
4,088,419	+				-0.2
4,088,420	-				+0.1
4,088,420	-				+1.0
4,088,420	-				-0.5
4,088,420	-				+1.1
4,088,420	-				+0.7
4,088,512	+				-0.4
4,088,512	+				-0.5
4,088,513	-				-2.0
4,088,530	+				+0.4
4,088,572	+		Sama_3459	0.15	-0.2
4,088,617	+		Sama_3459	0.25	-0.7
4,088,618	-		Sama_3459	0.26	+0.2
4,088,644	+		Sama_3459	0.32	+2.0
4,088,700	-		Sama_3459	0.45	-0.2
4,088,769	+		Sama_3459	0.61	-0.4
4,088,769	+		Sama_3459	0.61	-0.4
4,088,770	-		Sama_3459	0.61	+0.0
4,088,813	+		Sama_3459	0.71	+0.3
4,088,813	+		Sama_3459	0.71	-1.5
4,088,813	+		Sama_3459	0.71	-0.9
4,088,813	+		Sama_3459	0.71	+0.3
4,088,813	+		Sama_3459	0.71	-2.0
4,088,814	-		Sama_3459	0.71	-1.2
4,088,814	-		Sama_3459	0.71	+0.4
4,088,814	-		Sama_3459	0.71	-1.1
4,088,814	-		Sama_3459	0.71	-2.0
4,088,814	-		Sama_3459	0.71	-1.0
4,088,814	-		Sama_3459	0.71	-0.4
4,088,858	+		Sama_3459	0.81	-0.9
4,088,859	-		Sama_3459	0.81	-0.9
4,088,859	-		Sama_3459	0.81	-0.7
4,088,859	-		Sama_3459	0.81	-0.9
4,088,860	+		Sama_3459	0.82	-0.2
4,088,860	+		Sama_3459	0.82	+0.4
4,088,860	+		Sama_3459	0.82	-0.9
4,088,860	+		Sama_3459	0.82	+0.8
4,088,860	+		Sama_3459	0.82	-0.4
4,088,860	+		Sama_3459	0.82	+0.1
4,088,860	+		Sama_3459	0.82	+0.4
4,088,861	-		Sama_3459	0.82	-0.0
4,088,861	-		Sama_3459	0.82	-0.2
4,088,936	+				+0.2
4,088,966	+				-0.5
4,088,967	-				+0.7
4,089,027	+				-0.6
4,089,027	+				-1.0
4,089,027	+				+0.7
4,089,027	+				+0.2
4,089,027	+				-0.3
4,089,028	-				-0.4
4,089,028	-				+0.1
4,089,028	-				+0.5
4,089,028	-				+1.2
4,089,028	-				-0.3
4,089,128	-				+0.4
4,089,137	+				+1.6
4,089,137	+				-0.0
4,089,137	+				-0.6
4,089,138	-				+0.3
4,089,138	-				+0.5
4,089,138	-				-0.9
4,089,138	-				-1.5
4,089,138	-				-1.4
4,089,138	-				+1.5
4,089,143	+				+0.5
4,089,143	+				+0.6
4,089,158	+				+0.8
4,089,158	+				+2.0
4,089,158	+				+0.5
4,089,159	-				-0.6
4,089,166	+				+0.2
4,089,179	+				-0.5
4,089,190	+				-0.1
4,089,190	+				-0.6
4,089,190	+				+0.2
4,089,190	+				-1.2
4,089,190	+				+0.8
4,089,190	+				+1.2
4,089,191	-				+1.0
4,089,191	-				+1.1
4,089,191	-				-0.5
4,089,202	+				-0.8
4,089,202	+				-0.0
4,089,203	-				+0.6
4,089,203	-				+0.6
4,089,241	+				+0.4
4,089,303	+				+1.2
4,089,303	+				+0.7
4,089,303	+				-0.2
4,089,303	+				+0.1
4,089,303	+				-1.0
4,089,303	+				-1.2
4,089,304	-				+0.0
4,089,304	-				+0.5
4,089,304	-				+0.4