Experiment: L-Glutamic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_2086 and Sama_2087 are separated by 9 nucleotides Sama_2087 and Sama_2088 are separated by 4 nucleotides Sama_2088 and Sama_2089 overlap by 1 nucleotides Sama_2089 and Sama_2090 overlap by 11 nucleotides
Sama_2086: Sama_2086 - tolB protein (RefSeq), at 2,529,649 to 2,530,974
_2086
Sama_2087: Sama_2087 - hypothetical protein (RefSeq), at 2,530,984 to 2,531,967
_2087
Sama_2088: Sama_2088 - tolR protein (RefSeq), at 2,531,972 to 2,532,409
_2088
Sama_2089: Sama_2089 - MotA/TolQ/ExbB proton channel (RefSeq), at 2,532,409 to 2,533,098
_2089
Sama_2090: Sama_2090 - hypothetical protein (RefSeq), at 2,533,088 to 2,533,489
_2090
Position (kb)
2531
2532
2533 Strain fitness (log2 ratio)
-1
0
1 at 2530.986 kb on - strand at 2532.432 kb on - strand at 2533.176 kb on - strand, within Sama_2090 at 2533.176 kb on - strand, within Sama_2090 at 2533.176 kb on - strand, within Sama_2090 at 2533.176 kb on - strand, within Sama_2090 at 2533.176 kb on - strand, within Sama_2090 at 2533.176 kb on - strand, within Sama_2090 at 2533.254 kb on - strand, within Sama_2090 at 2533.254 kb on - strand, within Sama_2090
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic remove 2,530,986 - -1.0 2,532,432 - +0.1 2,533,176 - Sama_2090 0.22 +1.1 2,533,176 - Sama_2090 0.22 -0.1 2,533,176 - Sama_2090 0.22 -0.3 2,533,176 - Sama_2090 0.22 -0.4 2,533,176 - Sama_2090 0.22 -0.4 2,533,176 - Sama_2090 0.22 -1.5 2,533,254 - Sama_2090 0.41 +0.7 2,533,254 - Sama_2090 0.41 -0.4
Or see this region's nucleotide sequence