Experiment: L-Glutamic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0450 and Sama_0451 overlap by 4 nucleotides Sama_0451 and Sama_0452 overlap by 4 nucleotides Sama_0452 and Sama_0453 overlap by 17 nucleotides Sama_0453 and Sama_0454 are separated by 5 nucleotides
Sama_0450: Sama_0450 - biogenesis protein MshI (RefSeq), at 557,067 to 557,936
_0450
Sama_0451: Sama_0451 - hypothetical protein (RefSeq), at 557,933 to 558,535
_0451
Sama_0452: Sama_0452 - MSHA biogenesis protein MshJ (RefSeq), at 558,532 to 559,185
_0452
Sama_0453: Sama_0453 - MSHA biogenesis protein MshK (RefSeq), at 559,169 to 559,465
_0453
Sama_0454: Sama_0454 - MSHA biogenesis protein MshL (RefSeq), at 559,471 to 561,156
_0454
Position (kb) 557
558
559 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 556.947 kb on + strand at 556.955 kb on - strand at 556.957 kb on + strand at 556.957 kb on + strand at 556.957 kb on + strand at 556.957 kb on + strand at 556.958 kb on - strand at 556.968 kb on + strand at 556.968 kb on + strand at 556.968 kb on + strand at 556.968 kb on + strand at 556.968 kb on + strand at 556.969 kb on - strand at 556.969 kb on - strand at 556.972 kb on + strand at 556.981 kb on + strand at 556.985 kb on + strand at 556.989 kb on + strand at 556.989 kb on + strand at 556.989 kb on + strand at 556.989 kb on + strand at 556.990 kb on - strand at 556.990 kb on - strand at 556.990 kb on - strand at 556.990 kb on - strand at 556.993 kb on - strand at 557.038 kb on + strand at 557.039 kb on - strand at 557.039 kb on - strand at 557.055 kb on - strand at 557.130 kb on + strand at 557.130 kb on + strand at 557.130 kb on + strand at 557.130 kb on + strand at 557.130 kb on + strand at 557.131 kb on - strand at 557.131 kb on - strand at 557.236 kb on + strand, within Sama_0450 at 557.236 kb on + strand, within Sama_0450 at 557.237 kb on - strand, within Sama_0450 at 557.272 kb on + strand, within Sama_0450 at 557.272 kb on + strand, within Sama_0450 at 557.273 kb on - strand, within Sama_0450 at 557.273 kb on - strand, within Sama_0450 at 557.290 kb on - strand, within Sama_0450 at 557.360 kb on + strand, within Sama_0450 at 557.360 kb on + strand, within Sama_0450 at 557.360 kb on + strand, within Sama_0450 at 557.360 kb on + strand, within Sama_0450 at 557.361 kb on - strand, within Sama_0450 at 557.361 kb on - strand, within Sama_0450 at 557.361 kb on - strand, within Sama_0450 at 557.403 kb on + strand, within Sama_0450 at 557.403 kb on + strand, within Sama_0450 at 557.421 kb on - strand, within Sama_0450 at 557.437 kb on + strand, within Sama_0450 at 557.437 kb on + strand, within Sama_0450 at 557.509 kb on + strand, within Sama_0450 at 557.509 kb on + strand, within Sama_0450 at 557.510 kb on - strand, within Sama_0450 at 557.523 kb on - strand, within Sama_0450 at 557.523 kb on - strand, within Sama_0450 at 557.581 kb on + strand, within Sama_0450 at 557.582 kb on - strand, within Sama_0450 at 557.582 kb on - strand, within Sama_0450 at 557.605 kb on + strand, within Sama_0450 at 557.605 kb on + strand, within Sama_0450 at 557.605 kb on + strand, within Sama_0450 at 557.606 kb on - strand, within Sama_0450 at 557.606 kb on - strand, within Sama_0450 at 557.681 kb on - strand, within Sama_0450 at 557.700 kb on + strand, within Sama_0450 at 557.700 kb on + strand, within Sama_0450 at 557.748 kb on + strand, within Sama_0450 at 557.748 kb on + strand, within Sama_0450 at 557.748 kb on + strand, within Sama_0450 at 557.748 kb on + strand, within Sama_0450 at 557.749 kb on - strand, within Sama_0450 at 557.788 kb on + strand, within Sama_0450 at 557.788 kb on + strand, within Sama_0450 at 557.788 kb on + strand, within Sama_0450 at 557.788 kb on + strand, within Sama_0450 at 557.788 kb on + strand, within Sama_0450 at 557.788 kb on + strand, within Sama_0450 at 557.788 kb on + strand, within Sama_0450 at 557.789 kb on - strand, within Sama_0450 at 557.789 kb on - strand, within Sama_0450 at 557.789 kb on - strand, within Sama_0450 at 557.789 kb on - strand, within Sama_0450 at 557.789 kb on - strand, within Sama_0450 at 557.870 kb on + strand at 557.871 kb on - strand at 557.955 kb on + strand at 557.955 kb on + strand at 557.955 kb on + strand at 557.956 kb on - strand at 557.956 kb on - strand at 558.037 kb on - strand, within Sama_0451 at 558.082 kb on - strand, within Sama_0451 at 558.094 kb on + strand, within Sama_0451 at 558.094 kb on + strand, within Sama_0451 at 558.094 kb on + strand, within Sama_0451 at 558.094 kb on + strand, within Sama_0451 at 558.094 kb on + strand, within Sama_0451 at 558.094 kb on + strand, within Sama_0451 at 558.095 kb on - strand, within Sama_0451 at 558.095 kb on - strand, within Sama_0451 at 558.095 kb on - strand, within Sama_0451 at 558.095 kb on - strand, within Sama_0451 at 558.095 kb on - strand, within Sama_0451 at 558.095 kb on - strand, within Sama_0451 at 558.098 kb on - strand, within Sama_0451 at 558.278 kb on + strand, within Sama_0451 at 558.278 kb on + strand, within Sama_0451 at 558.289 kb on + strand, within Sama_0451 at 558.289 kb on + strand, within Sama_0451 at 558.289 kb on + strand, within Sama_0451 at 558.290 kb on - strand, within Sama_0451 at 558.290 kb on - strand, within Sama_0451 at 558.290 kb on - strand, within Sama_0451 at 558.290 kb on - strand, within Sama_0451 at 558.418 kb on + strand, within Sama_0451 at 558.418 kb on + strand, within Sama_0451 at 558.418 kb on + strand, within Sama_0451 at 558.418 kb on + strand, within Sama_0451 at 558.419 kb on - strand, within Sama_0451 at 558.481 kb on + strand at 558.497 kb on - strand at 558.497 kb on - strand at 558.497 kb on - strand at 558.578 kb on + strand at 558.578 kb on + strand at 558.578 kb on + strand at 558.578 kb on + strand at 558.578 kb on + strand at 558.578 kb on + strand at 558.578 kb on + strand at 558.579 kb on - strand at 558.594 kb on + strand at 558.624 kb on + strand, within Sama_0452 at 558.624 kb on + strand, within Sama_0452 at 558.624 kb on + strand, within Sama_0452 at 558.624 kb on + strand, within Sama_0452 at 558.624 kb on + strand, within Sama_0452 at 558.624 kb on + strand, within Sama_0452 at 558.624 kb on + strand, within Sama_0452 at 558.624 kb on + strand, within Sama_0452 at 558.624 kb on + strand, within Sama_0452 at 558.624 kb on + strand, within Sama_0452 at 558.624 kb on + strand, within Sama_0452 at 558.625 kb on - strand, within Sama_0452 at 558.625 kb on - strand, within Sama_0452 at 558.625 kb on - strand, within Sama_0452 at 558.625 kb on - strand, within Sama_0452 at 558.625 kb on - strand, within Sama_0452 at 558.625 kb on - strand, within Sama_0452 at 558.625 kb on - strand, within Sama_0452 at 558.625 kb on - strand, within Sama_0452 at 558.665 kb on - strand, within Sama_0452 at 558.687 kb on - strand, within Sama_0452 at 558.728 kb on + strand, within Sama_0452 at 558.728 kb on + strand, within Sama_0452 at 558.728 kb on + strand, within Sama_0452 at 558.728 kb on + strand, within Sama_0452 at 558.728 kb on + strand, within Sama_0452 at 558.728 kb on + strand, within Sama_0452 at 558.728 kb on + strand, within Sama_0452 at 558.729 kb on - strand, within Sama_0452 at 558.729 kb on - strand, within Sama_0452 at 558.729 kb on - strand, within Sama_0452 at 558.729 kb on - strand, within Sama_0452 at 558.729 kb on - strand, within Sama_0452 at 558.736 kb on + strand, within Sama_0452 at 558.737 kb on - strand, within Sama_0452 at 558.737 kb on - strand, within Sama_0452 at 558.846 kb on + strand, within Sama_0452 at 558.847 kb on - strand, within Sama_0452 at 558.986 kb on - strand, within Sama_0452 at 559.075 kb on + strand, within Sama_0452 at 559.075 kb on + strand, within Sama_0452 at 559.076 kb on - strand, within Sama_0452 at 559.108 kb on + strand, within Sama_0452 at 559.108 kb on + strand, within Sama_0452 at 559.140 kb on + strand at 559.141 kb on - strand at 559.183 kb on + strand at 559.183 kb on + strand at 559.184 kb on - strand at 559.188 kb on + strand at 559.188 kb on + strand at 559.277 kb on - strand, within Sama_0453 at 559.328 kb on + strand, within Sama_0453 at 559.328 kb on + strand, within Sama_0453 at 559.338 kb on + strand, within Sama_0453 at 559.338 kb on + strand, within Sama_0453 at 559.338 kb on + strand, within Sama_0453 at 559.338 kb on + strand, within Sama_0453 at 559.339 kb on - strand, within Sama_0453 at 559.339 kb on - strand, within Sama_0453 at 559.339 kb on - strand, within Sama_0453 at 559.354 kb on + strand, within Sama_0453 at 559.354 kb on + strand, within Sama_0453 at 559.354 kb on + strand, within Sama_0453 at 559.354 kb on + strand, within Sama_0453 at 559.354 kb on + strand, within Sama_0453 at 559.354 kb on + strand, within Sama_0453 at 559.354 kb on + strand, within Sama_0453 at 559.354 kb on + strand, within Sama_0453 at 559.355 kb on - strand, within Sama_0453 at 559.355 kb on - strand, within Sama_0453 at 559.355 kb on - strand, within Sama_0453 at 559.355 kb on - strand, within Sama_0453 at 559.369 kb on + strand, within Sama_0453 at 559.369 kb on + strand, within Sama_0453 at 559.450 kb on + strand at 559.450 kb on + strand at 559.451 kb on - strand at 559.451 kb on - strand at 559.453 kb on + strand at 559.454 kb on - strand at 559.463 kb on + strand at 559.463 kb on + strand at 559.463 kb on + strand at 559.463 kb on + strand at 559.463 kb on + strand at 559.464 kb on - strand at 559.464 kb on - strand at 559.464 kb on - strand at 559.464 kb on - strand at 559.466 kb on + strand at 559.466 kb on + strand at 559.466 kb on + strand at 559.466 kb on + strand at 559.466 kb on + strand at 559.466 kb on + strand at 559.466 kb on + strand at 559.466 kb on + strand at 559.466 kb on + strand at 559.466 kb on + strand at 559.466 kb on + strand at 559.466 kb on + strand at 559.467 kb on - strand at 559.467 kb on - strand at 559.467 kb on - strand at 559.467 kb on - strand at 559.467 kb on - strand at 559.467 kb on - strand at 559.467 kb on - strand at 559.467 kb on - strand at 559.467 kb on - strand at 559.467 kb on - strand at 559.467 kb on - strand at 559.467 kb on - strand at 559.467 kb on - strand at 559.470 kb on + strand at 559.470 kb on + strand at 559.470 kb on + strand at 559.470 kb on + strand at 559.470 kb on + strand at 559.470 kb on + strand at 559.471 kb on - strand at 559.471 kb on - strand at 559.471 kb on - strand at 559.485 kb on + strand at 559.486 kb on - strand at 559.492 kb on + strand at 559.492 kb on + strand at 559.492 kb on + strand at 559.493 kb on - strand at 559.497 kb on + strand at 559.523 kb on + strand at 559.523 kb on + strand at 559.523 kb on + strand at 559.523 kb on + strand at 559.523 kb on + strand at 559.523 kb on + strand at 559.523 kb on + strand at 559.524 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic remove 556,947 + +0.8 556,955 - -0.4 556,957 + +0.5 556,957 + -1.1 556,957 + +0.2 556,957 + -0.9 556,958 - -0.2 556,968 + -1.2 556,968 + +0.1 556,968 + -0.2 556,968 + +0.6 556,968 + -0.5 556,969 - +0.2 556,969 - +1.5 556,972 + -0.3 556,981 + -0.5 556,985 + -0.1 556,989 + -0.7 556,989 + -0.6 556,989 + +0.4 556,989 + +0.8 556,990 - +0.1 556,990 - -0.5 556,990 - +0.3 556,990 - -0.5 556,993 - -1.2 557,038 + -0.2 557,039 - +0.1 557,039 - -1.0 557,055 - +0.8 557,130 + -0.5 557,130 + -1.0 557,130 + +0.2 557,130 + -0.7 557,130 + -0.5 557,131 - +0.0 557,131 - -1.1 557,236 + Sama_0450 0.19 -2.0 557,236 + Sama_0450 0.19 -1.5 557,237 - Sama_0450 0.20 -0.8 557,272 + Sama_0450 0.24 -1.2 557,272 + Sama_0450 0.24 -1.7 557,273 - Sama_0450 0.24 -0.2 557,273 - Sama_0450 0.24 +0.0 557,290 - Sama_0450 0.26 -1.8 557,360 + Sama_0450 0.34 +0.3 557,360 + Sama_0450 0.34 -0.5 557,360 + Sama_0450 0.34 -0.8 557,360 + Sama_0450 0.34 +0.3 557,361 - Sama_0450 0.34 -0.1 557,361 - Sama_0450 0.34 +0.4 557,361 - Sama_0450 0.34 -0.1 557,403 + Sama_0450 0.39 +0.3 557,403 + Sama_0450 0.39 +0.5 557,421 - Sama_0450 0.41 +0.2 557,437 + Sama_0450 0.43 +0.2 557,437 + Sama_0450 0.43 +1.4 557,509 + Sama_0450 0.51 -2.1 557,509 + Sama_0450 0.51 -1.8 557,510 - Sama_0450 0.51 -0.6 557,523 - Sama_0450 0.52 -1.2 557,523 - Sama_0450 0.52 +0.0 557,581 + Sama_0450 0.59 +0.0 557,582 - Sama_0450 0.59 -3.3 557,582 - Sama_0450 0.59 +1.1 557,605 + Sama_0450 0.62 +0.0 557,605 + Sama_0450 0.62 +0.2 557,605 + Sama_0450 0.62 +0.5 557,606 - Sama_0450 0.62 -0.5 557,606 - Sama_0450 0.62 -0.7 557,681 - Sama_0450 0.71 +1.8 557,700 + Sama_0450 0.73 -1.5 557,700 + Sama_0450 0.73 -1.6 557,748 + Sama_0450 0.78 -1.4 557,748 + Sama_0450 0.78 -0.8 557,748 + Sama_0450 0.78 -0.1 557,748 + Sama_0450 0.78 -1.7 557,749 - Sama_0450 0.78 -2.0 557,788 + Sama_0450 0.83 +0.0 557,788 + Sama_0450 0.83 -0.9 557,788 + Sama_0450 0.83 -0.8 557,788 + Sama_0450 0.83 -1.0 557,788 + Sama_0450 0.83 -0.7 557,788 + Sama_0450 0.83 -0.5 557,788 + Sama_0450 0.83 -0.5 557,789 - Sama_0450 0.83 -0.2 557,789 - Sama_0450 0.83 -1.4 557,789 - Sama_0450 0.83 +0.3 557,789 - Sama_0450 0.83 +0.1 557,789 - Sama_0450 0.83 -0.3 557,870 + +0.5 557,871 - -1.8 557,955 + -1.8 557,955 + +0.5 557,955 + -0.3 557,956 - +0.8 557,956 - +0.2 558,037 - Sama_0451 0.17 +0.1 558,082 - Sama_0451 0.25 -0.5 558,094 + Sama_0451 0.27 -0.7 558,094 + Sama_0451 0.27 -1.1 558,094 + Sama_0451 0.27 +1.8 558,094 + Sama_0451 0.27 +0.3 558,094 + Sama_0451 0.27 -0.2 558,094 + Sama_0451 0.27 -0.9 558,095 - Sama_0451 0.27 -0.6 558,095 - Sama_0451 0.27 -2.7 558,095 - Sama_0451 0.27 +0.8 558,095 - Sama_0451 0.27 +0.2 558,095 - Sama_0451 0.27 -1.2 558,095 - Sama_0451 0.27 +0.6 558,098 - Sama_0451 0.27 +0.4 558,278 + Sama_0451 0.57 +0.2 558,278 + Sama_0451 0.57 -1.0 558,289 + Sama_0451 0.59 +0.5 558,289 + Sama_0451 0.59 -1.4 558,289 + Sama_0451 0.59 -2.3 558,290 - Sama_0451 0.59 +0.8 558,290 - Sama_0451 0.59 +0.0 558,290 - Sama_0451 0.59 -0.4 558,290 - Sama_0451 0.59 +1.4 558,418 + Sama_0451 0.80 -1.1 558,418 + Sama_0451 0.80 -1.0 558,418 + Sama_0451 0.80 +0.2 558,418 + Sama_0451 0.80 -2.4 558,419 - Sama_0451 0.81 -0.8 558,481 + -2.0 558,497 - -0.5 558,497 - -1.5 558,497 - -0.8 558,578 + -0.5 558,578 + +0.8 558,578 + +1.8 558,578 + -2.4 558,578 + -0.4 558,578 + -0.9 558,578 + +0.2 558,579 - +0.2 558,594 + -0.4 558,624 + Sama_0452 0.14 -0.4 558,624 + Sama_0452 0.14 -0.8 558,624 + Sama_0452 0.14 -1.9 558,624 + Sama_0452 0.14 -1.4 558,624 + Sama_0452 0.14 -0.7 558,624 + Sama_0452 0.14 -0.9 558,624 + Sama_0452 0.14 -1.7 558,624 + Sama_0452 0.14 +1.1 558,624 + Sama_0452 0.14 -0.0 558,624 + Sama_0452 0.14 -1.8 558,624 + Sama_0452 0.14 -1.9 558,625 - Sama_0452 0.14 -0.5 558,625 - Sama_0452 0.14 -1.7 558,625 - Sama_0452 0.14 -1.0 558,625 - Sama_0452 0.14 -1.0 558,625 - Sama_0452 0.14 -0.3 558,625 - Sama_0452 0.14 -1.4 558,625 - Sama_0452 0.14 -0.4 558,625 - Sama_0452 0.14 +0.5 558,665 - Sama_0452 0.20 -0.7 558,687 - Sama_0452 0.24 +0.1 558,728 + Sama_0452 0.30 -1.2 558,728 + Sama_0452 0.30 -0.5 558,728 + Sama_0452 0.30 -0.2 558,728 + Sama_0452 0.30 -0.8 558,728 + Sama_0452 0.30 -0.9 558,728 + Sama_0452 0.30 -0.8 558,728 + Sama_0452 0.30 -1.2 558,729 - Sama_0452 0.30 +1.0 558,729 - Sama_0452 0.30 -0.0 558,729 - Sama_0452 0.30 -0.0 558,729 - Sama_0452 0.30 -0.5 558,729 - Sama_0452 0.30 -1.0 558,736 + Sama_0452 0.31 -2.1 558,737 - Sama_0452 0.31 +0.8 558,737 - Sama_0452 0.31 +0.2 558,846 + Sama_0452 0.48 -2.0 558,847 - Sama_0452 0.48 -0.5 558,986 - Sama_0452 0.69 -0.9 559,075 + Sama_0452 0.83 -1.5 559,075 + Sama_0452 0.83 -1.8 559,076 - Sama_0452 0.83 +0.6 559,108 + Sama_0452 0.88 -0.4 559,108 + Sama_0452 0.88 -1.4 559,140 + -1.1 559,141 - +1.0 559,183 + -1.9 559,183 + -0.5 559,184 - +0.6 559,188 + -0.8 559,188 + -1.4 559,277 - Sama_0453 0.36 -2.2 559,328 + Sama_0453 0.54 +0.6 559,328 + Sama_0453 0.54 -1.1 559,338 + Sama_0453 0.57 -2.7 559,338 + Sama_0453 0.57 -0.8 559,338 + Sama_0453 0.57 -1.9 559,338 + Sama_0453 0.57 -1.8 559,339 - Sama_0453 0.57 -0.4 559,339 - Sama_0453 0.57 +0.2 559,339 - Sama_0453 0.57 -0.7 559,354 + Sama_0453 0.62 -0.9 559,354 + Sama_0453 0.62 -0.1 559,354 + Sama_0453 0.62 -0.5 559,354 + Sama_0453 0.62 -1.0 559,354 + Sama_0453 0.62 -0.2 559,354 + Sama_0453 0.62 -1.2 559,354 + Sama_0453 0.62 -1.4 559,354 + Sama_0453 0.62 -2.6 559,355 - Sama_0453 0.63 +1.4 559,355 - Sama_0453 0.63 +0.3 559,355 - Sama_0453 0.63 -1.4 559,355 - Sama_0453 0.63 -2.0 559,369 + Sama_0453 0.67 -0.2 559,369 + Sama_0453 0.67 -0.0 559,450 + -0.3 559,450 + -1.7 559,451 - -0.5 559,451 - +0.4 559,453 + -1.7 559,454 - +0.8 559,463 + -0.3 559,463 + +0.8 559,463 + -0.8 559,463 + -0.7 559,463 + +0.7 559,464 - -2.3 559,464 - -0.2 559,464 - +0.2 559,464 - -2.7 559,466 + -1.5 559,466 + +0.5 559,466 + -2.0 559,466 + +0.1 559,466 + -0.4 559,466 + -1.6 559,466 + -1.5 559,466 + +1.2 559,466 + -1.2 559,466 + -0.6 559,466 + -0.4 559,466 + +0.1 559,467 - +1.8 559,467 - -0.6 559,467 - +0.6 559,467 - -1.3 559,467 - -1.5 559,467 - +0.2 559,467 - +0.3 559,467 - -0.2 559,467 - +0.6 559,467 - -0.4 559,467 - -0.8 559,467 - +0.2 559,467 - -1.8 559,470 + -1.1 559,470 + +1.0 559,470 + -0.0 559,470 + +0.2 559,470 + -1.0 559,470 + -1.3 559,471 - -1.1 559,471 - -0.6 559,471 - -0.2 559,485 + -0.0 559,486 - -0.0 559,492 + +0.2 559,492 + -0.6 559,492 + -1.2 559,493 - +1.2 559,497 + -0.2 559,523 + +0.2 559,523 + -0.4 559,523 + -1.7 559,523 + +0.8 559,523 + -0.8 559,523 + -0.8 559,523 + +0.8 559,524 - -0.9
Or see this region's nucleotide sequence