Experiment: m.b. nitrate 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_4081 and Dshi_4082 are separated by 138 nucleotides Dshi_4082 and Dshi_4083 overlap by 4 nucleotides Dshi_4083 and Dshi_4084 are separated by 122 nucleotides
Dshi_4081: Dshi_4081 - Resolvase domain (RefSeq), at 16,240 to 16,839
_4081
Dshi_4082: Dshi_4082 - Integrase catalytic region (RefSeq), at 16,978 to 18,471
_4082
Dshi_4083: Dshi_4083 - ATP-binding protein (RefSeq), at 18,468 to 19,292
_4083
Dshi_4084: Dshi_4084 - Resolvase domain (RefSeq), at 19,415 to 19,981
_4084
Position (kb) 16
17
18
19 Strain fitness (log2 ratio) -2
-1
0
1
2 at 19.324 kb on + strand at 19.324 kb on + strand at 19.334 kb on + strand at 19.337 kb on + strand at 19.339 kb on + strand at 19.339 kb on + strand at 19.342 kb on - strand at 19.342 kb on - strand at 19.347 kb on - strand at 19.419 kb on + strand at 19.420 kb on + strand at 19.420 kb on + strand at 19.426 kb on - strand at 19.427 kb on - strand at 19.428 kb on - strand at 19.453 kb on + strand at 19.453 kb on + strand at 19.461 kb on - strand at 19.461 kb on - strand at 19.461 kb on - strand at 19.466 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrate 300 mM remove 19,324 + -1.7 19,324 + +0.3 19,334 + -0.4 19,337 + +0.7 19,339 + -2.2 19,339 + +2.2 19,342 - -0.0 19,342 - +1.0 19,347 - +1.0 19,419 + -0.3 19,420 + -0.8 19,420 + +1.6 19,426 - +1.8 19,427 - +1.8 19,428 - +0.1 19,453 + -0.2 19,453 + -0.5 19,461 - +0.3 19,461 - +0.3 19,461 - -1.2 19,466 - -0.3
Or see this region's nucleotide sequence