Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3750

Experiment: m.b. nitrate 300 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3748 and Dshi_3749 are separated by 120 nucleotidesDshi_3749 and Dshi_3750 overlap by 14 nucleotidesDshi_3750 and Dshi_3751 are separated by 3 nucleotides Dshi_3748: Dshi_3748 - Resolvase domain (RefSeq), at 155,050 to 155,931 _3748 Dshi_3749: Dshi_3749 - putative addiction module antidote protein, CopG/Arc/MetJ family (RefSeq), at 156,052 to 156,297 _3749 Dshi_3750: Dshi_3750 - plasmid stabilization system (RefSeq), at 156,284 to 156,592 _3750 Dshi_3751: Dshi_3751 - integrase family protein (RefSeq), at 156,596 to 157,705 _3751 Position (kb) 156 157Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 155.290 kb on + strand, within Dshi_3748at 155.290 kb on + strand, within Dshi_3748at 155.298 kb on - strand, within Dshi_3748at 155.362 kb on + strand, within Dshi_3748at 155.375 kb on - strand, within Dshi_3748at 155.411 kb on + strand, within Dshi_3748at 155.411 kb on + strand, within Dshi_3748at 155.411 kb on - strand, within Dshi_3748at 155.412 kb on - strand, within Dshi_3748at 155.419 kb on - strand, within Dshi_3748at 155.419 kb on - strand, within Dshi_3748at 155.442 kb on + strand, within Dshi_3748at 155.450 kb on - strand, within Dshi_3748at 155.450 kb on - strand, within Dshi_3748at 155.465 kb on + strand, within Dshi_3748at 155.466 kb on + strand, within Dshi_3748at 155.473 kb on - strand, within Dshi_3748at 155.505 kb on + strand, within Dshi_3748at 155.505 kb on + strand, within Dshi_3748at 155.513 kb on - strand, within Dshi_3748at 155.513 kb on - strand, within Dshi_3748at 155.545 kb on + strand, within Dshi_3748at 155.550 kb on + strand, within Dshi_3748at 155.553 kb on - strand, within Dshi_3748at 155.555 kb on + strand, within Dshi_3748at 155.558 kb on - strand, within Dshi_3748at 155.563 kb on - strand, within Dshi_3748at 155.563 kb on - strand, within Dshi_3748at 155.563 kb on - strand, within Dshi_3748at 155.563 kb on - strand, within Dshi_3748at 155.563 kb on - strand, within Dshi_3748at 155.563 kb on - strand, within Dshi_3748at 155.575 kb on - strand, within Dshi_3748at 155.595 kb on - strand, within Dshi_3748at 155.605 kb on - strand, within Dshi_3748at 155.639 kb on - strand, within Dshi_3748at 155.692 kb on - strand, within Dshi_3748at 155.692 kb on - strand, within Dshi_3748at 155.703 kb on + strand, within Dshi_3748at 155.711 kb on - strand, within Dshi_3748at 155.749 kb on - strand, within Dshi_3748at 155.759 kb on + strand, within Dshi_3748at 155.791 kb on + strand, within Dshi_3748at 155.791 kb on + strand, within Dshi_3748at 155.799 kb on - strand, within Dshi_3748at 155.799 kb on - strand, within Dshi_3748at 155.803 kb on - strand, within Dshi_3748at 155.803 kb on - strand, within Dshi_3748at 155.837 kb on - strand, within Dshi_3748at 155.841 kb on + strand, within Dshi_3748at 155.847 kb on - strandat 155.850 kb on + strandat 155.878 kb on + strandat 155.878 kb on + strandat 155.878 kb on + strandat 155.883 kb on + strandat 155.886 kb on - strandat 155.886 kb on - strandat 155.892 kb on + strandat 155.895 kb on - strandat 155.917 kb on + strandat 155.976 kb on + strandat 155.976 kb on + strandat 155.981 kb on + strandat 155.981 kb on + strandat 155.984 kb on - strandat 155.984 kb on - strandat 155.997 kb on - strandat 156.108 kb on + strand, within Dshi_3749at 156.108 kb on + strand, within Dshi_3749at 156.164 kb on - strand, within Dshi_3749at 156.179 kb on - strand, within Dshi_3749at 156.224 kb on + strand, within Dshi_3749at 156.238 kb on - strand, within Dshi_3749at 156.238 kb on - strand, within Dshi_3749at 156.271 kb on - strand, within Dshi_3749at 156.292 kb on + strandat 156.315 kb on - strand, within Dshi_3750at 156.315 kb on - strand, within Dshi_3750at 156.332 kb on - strand, within Dshi_3750at 156.334 kb on + strand, within Dshi_3750at 156.334 kb on + strand, within Dshi_3750at 156.346 kb on + strand, within Dshi_3750at 156.346 kb on + strand, within Dshi_3750at 156.363 kb on + strand, within Dshi_3750at 156.369 kb on - strand, within Dshi_3750at 156.410 kb on + strand, within Dshi_3750at 156.410 kb on + strand, within Dshi_3750at 156.410 kb on - strand, within Dshi_3750at 156.418 kb on - strand, within Dshi_3750at 156.418 kb on - strand, within Dshi_3750at 156.418 kb on - strand, within Dshi_3750at 156.419 kb on - strand, within Dshi_3750at 156.459 kb on + strand, within Dshi_3750at 156.460 kb on + strand, within Dshi_3750at 156.473 kb on + strand, within Dshi_3750at 156.479 kb on + strand, within Dshi_3750at 156.486 kb on - strand, within Dshi_3750at 156.492 kb on - strand, within Dshi_3750at 156.492 kb on - strand, within Dshi_3750at 156.528 kb on + strand, within Dshi_3750at 156.529 kb on - strand, within Dshi_3750at 156.529 kb on - strand, within Dshi_3750at 156.557 kb on + strand, within Dshi_3750at 156.562 kb on + strandat 156.565 kb on + strandat 156.570 kb on + strandat 156.588 kb on - strandat 156.609 kb on + strandat 156.609 kb on - strandat 156.617 kb on - strandat 156.617 kb on - strandat 156.617 kb on - strandat 156.629 kb on + strandat 156.662 kb on + strandat 156.674 kb on + strandat 156.674 kb on + strandat 156.686 kb on - strandat 156.686 kb on - strandat 156.723 kb on - strand, within Dshi_3751at 156.723 kb on - strand, within Dshi_3751at 156.723 kb on - strand, within Dshi_3751at 156.723 kb on - strand, within Dshi_3751at 156.733 kb on - strand, within Dshi_3751at 156.733 kb on - strand, within Dshi_3751at 156.733 kb on - strand, within Dshi_3751at 156.784 kb on + strand, within Dshi_3751at 156.792 kb on - strand, within Dshi_3751at 156.792 kb on - strand, within Dshi_3751at 156.838 kb on - strand, within Dshi_3751at 156.877 kb on + strand, within Dshi_3751at 156.885 kb on - strand, within Dshi_3751at 156.885 kb on - strand, within Dshi_3751at 156.915 kb on + strand, within Dshi_3751at 156.934 kb on + strand, within Dshi_3751at 156.934 kb on + strand, within Dshi_3751at 156.934 kb on + strand, within Dshi_3751at 156.934 kb on + strand, within Dshi_3751at 156.942 kb on - strand, within Dshi_3751at 156.942 kb on - strand, within Dshi_3751at 156.942 kb on - strand, within Dshi_3751at 156.942 kb on - strand, within Dshi_3751at 156.959 kb on - strand, within Dshi_3751at 156.964 kb on - strand, within Dshi_3751at 157.015 kb on + strand, within Dshi_3751at 157.024 kb on - strand, within Dshi_3751at 157.049 kb on - strand, within Dshi_3751at 157.058 kb on + strand, within Dshi_3751at 157.067 kb on - strand, within Dshi_3751at 157.163 kb on - strand, within Dshi_3751at 157.165 kb on + strand, within Dshi_3751at 157.165 kb on + strand, within Dshi_3751at 157.165 kb on + strand, within Dshi_3751at 157.165 kb on + strand, within Dshi_3751at 157.165 kb on + strand, within Dshi_3751at 157.165 kb on + strand, within Dshi_3751at 157.173 kb on - strand, within Dshi_3751at 157.177 kb on + strand, within Dshi_3751at 157.243 kb on - strand, within Dshi_3751at 157.243 kb on - strand, within Dshi_3751at 157.297 kb on + strand, within Dshi_3751at 157.297 kb on + strand, within Dshi_3751at 157.297 kb on + strand, within Dshi_3751at 157.297 kb on + strand, within Dshi_3751at 157.302 kb on + strand, within Dshi_3751at 157.305 kb on - strand, within Dshi_3751at 157.305 kb on - strand, within Dshi_3751at 157.319 kb on + strand, within Dshi_3751at 157.319 kb on + strand, within Dshi_3751at 157.327 kb on - strand, within Dshi_3751at 157.360 kb on - strand, within Dshi_3751at 157.366 kb on + strand, within Dshi_3751at 157.366 kb on + strand, within Dshi_3751at 157.366 kb on + strand, within Dshi_3751at 157.374 kb on - strand, within Dshi_3751at 157.374 kb on - strand, within Dshi_3751at 157.374 kb on - strand, within Dshi_3751at 157.374 kb on - strandat 157.374 kb on - strand, within Dshi_3751at 157.375 kb on + strand, within Dshi_3751at 157.388 kb on - strand, within Dshi_3751at 157.388 kb on - strand, within Dshi_3751at 157.399 kb on + strand, within Dshi_3751at 157.434 kb on + strand, within Dshi_3751at 157.440 kb on - strand, within Dshi_3751at 157.464 kb on - strand, within Dshi_3751at 157.497 kb on + strand, within Dshi_3751at 157.504 kb on - strand, within Dshi_3751at 157.505 kb on - strand, within Dshi_3751at 157.510 kb on + strand, within Dshi_3751at 157.557 kb on - strand, within Dshi_3751at 157.558 kb on + strand, within Dshi_3751at 157.566 kb on - strand, within Dshi_3751at 157.576 kb on - strand, within Dshi_3751at 157.587 kb on - strand, within Dshi_3751at 157.587 kb on - strand, within Dshi_3751at 157.587 kb on - strand, within Dshi_3751at 157.587 kb on - strand, within Dshi_3751

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrate 300 mM
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155,290 + Dshi_3748 0.27 -2.6
155,290 + Dshi_3748 0.27 -0.2
155,298 - Dshi_3748 0.28 -1.1
155,362 + Dshi_3748 0.35 -0.3
155,375 - Dshi_3748 0.37 -0.2
155,411 + Dshi_3748 0.41 -0.3
155,411 + Dshi_3748 0.41 -0.1
155,411 - Dshi_3748 0.41 +0.4
155,412 - Dshi_3748 0.41 -0.4
155,419 - Dshi_3748 0.42 -1.9
155,419 - Dshi_3748 0.42 -2.9
155,442 + Dshi_3748 0.44 -0.3
155,450 - Dshi_3748 0.45 -0.1
155,450 - Dshi_3748 0.45 -0.7
155,465 + Dshi_3748 0.47 +1.2
155,466 + Dshi_3748 0.47 -0.2
155,473 - Dshi_3748 0.48 +0.3
155,505 + Dshi_3748 0.52 -1.4
155,505 + Dshi_3748 0.52 -0.9
155,513 - Dshi_3748 0.52 -0.1
155,513 - Dshi_3748 0.52 -0.9
155,545 + Dshi_3748 0.56 -0.2
155,550 + Dshi_3748 0.57 +0.5
155,553 - Dshi_3748 0.57 -1.0
155,555 + Dshi_3748 0.57 -1.4
155,558 - Dshi_3748 0.58 -0.7
155,563 - Dshi_3748 0.58 -3.0
155,563 - Dshi_3748 0.58 -1.5
155,563 - Dshi_3748 0.58 -0.7
155,563 - Dshi_3748 0.58 -2.4
155,563 - Dshi_3748 0.58 -1.4
155,563 - Dshi_3748 0.58 -0.5
155,575 - Dshi_3748 0.60 +0.2
155,595 - Dshi_3748 0.62 +1.8
155,605 - Dshi_3748 0.63 +0.2
155,639 - Dshi_3748 0.67 +0.2
155,692 - Dshi_3748 0.73 +1.2
155,692 - Dshi_3748 0.73 +0.2
155,703 + Dshi_3748 0.74 -0.6
155,711 - Dshi_3748 0.75 +0.1
155,749 - Dshi_3748 0.79 +0.4
155,759 + Dshi_3748 0.80 +0.5
155,791 + Dshi_3748 0.84 -0.8
155,791 + Dshi_3748 0.84 -0.3
155,799 - Dshi_3748 0.85 -0.7
155,799 - Dshi_3748 0.85 -0.2
155,803 - Dshi_3748 0.85 +1.9
155,803 - Dshi_3748 0.85 -0.2
155,837 - Dshi_3748 0.89 +2.9
155,841 + Dshi_3748 0.90 -2.1
155,847 - -0.8
155,850 + -1.7
155,878 + -2.0
155,878 + -0.7
155,878 + -2.6
155,883 + -0.7
155,886 - -0.4
155,886 - -0.6
155,892 + +0.2
155,895 - -0.0
155,917 + -0.6
155,976 + +0.1
155,976 + +0.5
155,981 + -1.5
155,981 + +1.3
155,984 - -0.7
155,984 - -0.4
155,997 - -1.3
156,108 + Dshi_3749 0.23 -2.0
156,108 + Dshi_3749 0.23 -0.6
156,164 - Dshi_3749 0.46 +1.3
156,179 - Dshi_3749 0.52 +0.8
156,224 + Dshi_3749 0.70 -0.7
156,238 - Dshi_3749 0.76 -1.3
156,238 - Dshi_3749 0.76 +1.2
156,271 - Dshi_3749 0.89 -0.2
156,292 + +0.1
156,315 - Dshi_3750 0.10 -1.0
156,315 - Dshi_3750 0.10 -0.4
156,332 - Dshi_3750 0.16 -0.5
156,334 + Dshi_3750 0.16 +0.2
156,334 + Dshi_3750 0.16 -1.1
156,346 + Dshi_3750 0.20 +2.7
156,346 + Dshi_3750 0.20 -1.3
156,363 + Dshi_3750 0.26 -1.1
156,369 - Dshi_3750 0.28 -0.8
156,410 + Dshi_3750 0.41 -2.0
156,410 + Dshi_3750 0.41 -0.1
156,410 - Dshi_3750 0.41 -0.7
156,418 - Dshi_3750 0.43 -0.7
156,418 - Dshi_3750 0.43 +1.0
156,418 - Dshi_3750 0.43 -1.8
156,419 - Dshi_3750 0.44 -0.6
156,459 + Dshi_3750 0.57 -0.5
156,460 + Dshi_3750 0.57 -0.6
156,473 + Dshi_3750 0.61 +0.6
156,479 + Dshi_3750 0.63 -1.8
156,486 - Dshi_3750 0.65 -0.6
156,492 - Dshi_3750 0.67 -0.6
156,492 - Dshi_3750 0.67 +0.2
156,528 + Dshi_3750 0.79 +1.3
156,529 - Dshi_3750 0.79 -0.1
156,529 - Dshi_3750 0.79 -0.4
156,557 + Dshi_3750 0.88 +0.0
156,562 + -1.0
156,565 + +0.2
156,570 + -1.7
156,588 - +2.2
156,609 + -0.5
156,609 - -1.2
156,617 - -0.9
156,617 - -0.9
156,617 - +0.1
156,629 + -0.6
156,662 + +1.8
156,674 + -1.2
156,674 + -2.2
156,686 - -1.3
156,686 - +0.5
156,723 - Dshi_3751 0.11 -0.6
156,723 - Dshi_3751 0.11 +0.7
156,723 - Dshi_3751 0.11 -0.3
156,723 - Dshi_3751 0.11 +3.1
156,733 - Dshi_3751 0.12 -0.2
156,733 - Dshi_3751 0.12 -0.4
156,733 - Dshi_3751 0.12 -0.7
156,784 + Dshi_3751 0.17 -3.8
156,792 - Dshi_3751 0.18 +0.1
156,792 - Dshi_3751 0.18 +0.8
156,838 - Dshi_3751 0.22 +2.3
156,877 + Dshi_3751 0.25 +0.1
156,885 - Dshi_3751 0.26 -0.7
156,885 - Dshi_3751 0.26 -0.1
156,915 + Dshi_3751 0.29 -3.0
156,934 + Dshi_3751 0.30 -1.2
156,934 + Dshi_3751 0.30 -0.1
156,934 + Dshi_3751 0.30 -1.5
156,934 + Dshi_3751 0.30 -0.8
156,942 - Dshi_3751 0.31 -0.9
156,942 - Dshi_3751 0.31 -1.1
156,942 - Dshi_3751 0.31 -0.6
156,942 - Dshi_3751 0.31 -2.6
156,959 - Dshi_3751 0.33 -0.8
156,964 - Dshi_3751 0.33 -1.3
157,015 + Dshi_3751 0.38 -0.8
157,024 - Dshi_3751 0.39 -1.2
157,049 - Dshi_3751 0.41 -0.1
157,058 + Dshi_3751 0.42 +0.2
157,067 - Dshi_3751 0.42 -0.2
157,163 - Dshi_3751 0.51 +0.8
157,165 + Dshi_3751 0.51 +0.5
157,165 + Dshi_3751 0.51 +2.3
157,165 + Dshi_3751 0.51 +0.2
157,165 + Dshi_3751 0.51 -0.5
157,165 + Dshi_3751 0.51 -1.7
157,165 + Dshi_3751 0.51 +0.1
157,173 - Dshi_3751 0.52 -0.4
157,177 + Dshi_3751 0.52 +2.3
157,243 - Dshi_3751 0.58 -1.4
157,243 - Dshi_3751 0.58 -2.0
157,297 + Dshi_3751 0.63 +3.6
157,297 + Dshi_3751 0.63 +0.4
157,297 + Dshi_3751 0.63 -0.2
157,297 + Dshi_3751 0.63 +0.8
157,302 + Dshi_3751 0.64 -0.7
157,305 - Dshi_3751 0.64 -1.2
157,305 - Dshi_3751 0.64 -0.5
157,319 + Dshi_3751 0.65 -0.7
157,319 + Dshi_3751 0.65 -0.0
157,327 - Dshi_3751 0.66 -0.4
157,360 - Dshi_3751 0.69 -0.2
157,366 + Dshi_3751 0.69 +0.0
157,366 + Dshi_3751 0.69 +1.3
157,366 + Dshi_3751 0.69 -0.5
157,374 - Dshi_3751 0.70 -0.2
157,374 - Dshi_3751 0.70 -0.5
157,374 - Dshi_3751 0.70 -1.4
157,374 - +1.3
157,374 - Dshi_3751 0.70 -0.5
157,375 + Dshi_3751 0.70 -0.6
157,388 - Dshi_3751 0.71 +0.4
157,388 - Dshi_3751 0.71 -1.0
157,399 + Dshi_3751 0.72 +2.1
157,434 + Dshi_3751 0.75 -1.1
157,440 - Dshi_3751 0.76 +0.1
157,464 - Dshi_3751 0.78 -1.2
157,497 + Dshi_3751 0.81 -1.2
157,504 - Dshi_3751 0.82 -0.0
157,505 - Dshi_3751 0.82 -0.4
157,510 + Dshi_3751 0.82 -1.1
157,557 - Dshi_3751 0.87 +0.3
157,558 + Dshi_3751 0.87 +1.1
157,566 - Dshi_3751 0.87 +0.8
157,576 - Dshi_3751 0.88 -0.4
157,587 - Dshi_3751 0.89 -1.9
157,587 - Dshi_3751 0.89 +0.1
157,587 - Dshi_3751 0.89 -1.8
157,587 - Dshi_3751 0.89 -1.4

Or see this region's nucleotide sequence