Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3356

Experiment: m.b. nitrate 300 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3355 and Dshi_3356 are separated by 992 nucleotidesDshi_3356 and Dshi_3357 are separated by 23 nucleotides Dshi_3355: Dshi_3355 - DNA gyrase, B subunit (RefSeq), at 3,526,685 to 3,529,102 _3355 Dshi_3356: Dshi_3356 - transposase IS3/IS911 family protein (RefSeq), at 3,530,095 to 3,530,361 _3356 Dshi_3357: Dshi_3357 - Integrase catalytic region (RefSeq), at 3,530,385 to 3,531,194 _3357 Position (kb) 3530 3531Strain fitness (log2 ratio) -1 0 1 2 3at 3529.150 kb on + strandat 3529.194 kb on + strandat 3529.216 kb on + strandat 3529.274 kb on + strandat 3529.274 kb on + strandat 3529.276 kb on + strandat 3529.284 kb on - strandat 3529.290 kb on - strandat 3529.353 kb on - strandat 3529.360 kb on + strandat 3529.360 kb on + strandat 3529.360 kb on + strandat 3529.368 kb on - strandat 3529.368 kb on - strandat 3529.474 kb on - strandat 3529.474 kb on - strandat 3529.544 kb on + strandat 3529.562 kb on - strandat 3529.590 kb on + strandat 3529.590 kb on + strandat 3529.646 kb on + strandat 3529.646 kb on + strandat 3529.648 kb on + strandat 3529.653 kb on - strandat 3529.656 kb on - strandat 3529.658 kb on + strandat 3529.663 kb on - strandat 3529.668 kb on - strandat 3529.683 kb on + strandat 3529.744 kb on - strandat 3529.769 kb on - strandat 3529.806 kb on + strandat 3529.806 kb on - strandat 3529.813 kb on - strandat 3529.813 kb on - strandat 3529.825 kb on + strandat 3529.827 kb on + strandat 3529.832 kb on + strandat 3529.862 kb on + strandat 3529.867 kb on + strandat 3529.875 kb on - strandat 3529.892 kb on - strandat 3529.906 kb on + strandat 3529.913 kb on + strandat 3529.988 kb on - strandat 3529.990 kb on + strandat 3529.998 kb on - strandat 3529.998 kb on - strandat 3530.011 kb on + strandat 3530.019 kb on - strandat 3530.022 kb on + strandat 3530.022 kb on + strandat 3531.242 kb on + strandat 3531.242 kb on + strandat 3531.249 kb on + strandat 3531.249 kb on + strandat 3531.249 kb on + strandat 3531.249 kb on + strandat 3531.249 kb on + strandat 3531.249 kb on + strandat 3531.316 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrate 300 mM
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3,529,150 + -0.6
3,529,194 + -0.6
3,529,216 + -1.5
3,529,274 + -0.7
3,529,274 + -0.1
3,529,276 + -0.5
3,529,284 - +0.8
3,529,290 - -0.2
3,529,353 - +0.2
3,529,360 + -0.3
3,529,360 + -0.7
3,529,360 + +2.0
3,529,368 - +1.7
3,529,368 - -1.6
3,529,474 - +1.7
3,529,474 - -0.2
3,529,544 + -0.7
3,529,562 - +0.6
3,529,590 + +0.2
3,529,590 + -0.0
3,529,646 + -0.3
3,529,646 + +3.2
3,529,648 + -1.7
3,529,653 - -0.7
3,529,656 - -0.7
3,529,658 + +1.9
3,529,663 - +0.2
3,529,668 - -0.6
3,529,683 + -0.9
3,529,744 - +0.4
3,529,769 - -0.2
3,529,806 + +0.7
3,529,806 - -0.0
3,529,813 - +0.6
3,529,813 - +0.7
3,529,825 + -0.9
3,529,827 + +1.7
3,529,832 + -0.7
3,529,862 + +3.0
3,529,867 + +1.5
3,529,875 - +0.4
3,529,892 - +0.1
3,529,906 + -0.7
3,529,913 + +2.7
3,529,988 - -0.4
3,529,990 + +0.2
3,529,998 - +0.4
3,529,998 - -0.4
3,530,011 + +0.9
3,530,019 - +0.3
3,530,022 + -1.0
3,530,022 + -0.0
3,531,242 + +0.3
3,531,242 + +0.5
3,531,249 + -0.9
3,531,249 + +1.2
3,531,249 + -0.9
3,531,249 + +1.3
3,531,249 + -0.2
3,531,249 + +0.4
3,531,316 - -0.3

Or see this region's nucleotide sequence