Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3095

Experiment: m.b. nitrate 300 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3094 and Dshi_3095 overlap by 1 nucleotidesDshi_3095 and Dshi_3096 are separated by 2 nucleotidesDshi_3096 and Dshi_3097 are separated by 16 nucleotides Dshi_3094: Dshi_3094 - dihydroorotase, multifunctional complex type (RefSeq), at 3,262,081 to 3,263,379 _3094 Dshi_3095: Dshi_3095 - protein of unknown function DUF205 (RefSeq), at 3,263,379 to 3,263,990 _3095 Dshi_3096: Dshi_3096 - protein of unknown function DUF805 (RefSeq), at 3,263,993 to 3,264,499 _3096 Dshi_3097: Dshi_3097 - glutamate--cysteine ligase (RefSeq), at 3,264,516 to 3,265,886 _3097 Position (kb) 3263 3264Strain fitness (log2 ratio) -2 -1 0 1at 3262.440 kb on + strand, within Dshi_3094at 3262.527 kb on + strand, within Dshi_3094at 3263.344 kb on - strandat 3263.998 kb on - strandat 3264.004 kb on - strandat 3264.530 kb on - strandat 3264.825 kb on - strand, within Dshi_3097

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrate 300 mM
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3,262,440 + Dshi_3094 0.28 -2.7
3,262,527 + Dshi_3094 0.34 -0.9
3,263,344 - -0.9
3,263,998 - -2.5
3,264,004 - +0.7
3,264,530 - +0.1
3,264,825 - Dshi_3097 0.23 +0.7

Or see this region's nucleotide sequence