Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3075

Experiment: m.b. nitrate 300 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3074 and Dshi_3075 are separated by 95 nucleotidesDshi_3075 and Dshi_3076 are separated by 159 nucleotidesDshi_3076 and Dshi_3077 are separated by 77 nucleotides Dshi_3074: Dshi_3074 - Tetratricopeptide TPR_2 repeat protein (RefSeq), at 3,240,971 to 3,242,725 _3074 Dshi_3075: Dshi_3075 - Electron-transferring-flavoproteindehydrogenase (RefSeq), at 3,242,821 to 3,244,470 _3075 Dshi_3076: Dshi_3076 - transcription elongation factor GreA (RefSeq), at 3,244,630 to 3,245,145 _3076 Dshi_3077: Dshi_3077 - hypothetical protein (RefSeq), at 3,245,223 to 3,246,209 _3077 Position (kb) 3242 3243 3244 3245Strain fitness (log2 ratio) -3 -2 -1 0 1at 3242.662 kb on - strandat 3242.790 kb on + strandat 3244.482 kb on - strandat 3244.573 kb on + strandat 3244.581 kb on - strandat 3244.593 kb on + strandat 3244.602 kb on - strandat 3244.606 kb on - strandat 3244.724 kb on - strand, within Dshi_3076at 3244.734 kb on + strand, within Dshi_3076at 3244.740 kb on - strand, within Dshi_3076at 3244.742 kb on - strand, within Dshi_3076at 3244.772 kb on + strand, within Dshi_3076at 3244.891 kb on + strand, within Dshi_3076at 3244.910 kb on - strand, within Dshi_3076at 3244.998 kb on + strand, within Dshi_3076at 3245.063 kb on + strand, within Dshi_3076at 3245.081 kb on + strand, within Dshi_3076at 3245.096 kb on - strandat 3245.199 kb on + strandat 3245.215 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrate 300 mM
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3,242,662 - +0.7
3,242,790 + +0.4
3,244,482 - -0.2
3,244,573 + +0.7
3,244,581 - -0.6
3,244,593 + +0.3
3,244,602 - -0.4
3,244,606 - -3.7
3,244,724 - Dshi_3076 0.18 -0.7
3,244,734 + Dshi_3076 0.20 -1.1
3,244,740 - Dshi_3076 0.21 -2.1
3,244,742 - Dshi_3076 0.22 +0.7
3,244,772 + Dshi_3076 0.28 -2.2
3,244,891 + Dshi_3076 0.51 +0.1
3,244,910 - Dshi_3076 0.54 -0.5
3,244,998 + Dshi_3076 0.71 +0.7
3,245,063 + Dshi_3076 0.84 -1.3
3,245,081 + Dshi_3076 0.87 -2.5
3,245,096 - -1.1
3,245,199 + -0.9
3,245,215 + -0.8

Or see this region's nucleotide sequence