Experiment: m.b. nitrate 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3074 and Dshi_3075 are separated by 95 nucleotides Dshi_3075 and Dshi_3076 are separated by 159 nucleotides Dshi_3076 and Dshi_3077 are separated by 77 nucleotides
Dshi_3074: Dshi_3074 - Tetratricopeptide TPR_2 repeat protein (RefSeq), at 3,240,971 to 3,242,725
_3074
Dshi_3075: Dshi_3075 - Electron-transferring-flavoproteindehydrogenase (RefSeq), at 3,242,821 to 3,244,470
_3075
Dshi_3076: Dshi_3076 - transcription elongation factor GreA (RefSeq), at 3,244,630 to 3,245,145
_3076
Dshi_3077: Dshi_3077 - hypothetical protein (RefSeq), at 3,245,223 to 3,246,209
_3077
Position (kb)
3242
3243
3244
3245 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3242.662 kb on - strand at 3242.790 kb on + strand at 3244.482 kb on - strand at 3244.573 kb on + strand at 3244.581 kb on - strand at 3244.593 kb on + strand at 3244.602 kb on - strand at 3244.606 kb on - strand at 3244.724 kb on - strand, within Dshi_3076 at 3244.734 kb on + strand, within Dshi_3076 at 3244.740 kb on - strand, within Dshi_3076 at 3244.742 kb on - strand, within Dshi_3076 at 3244.772 kb on + strand, within Dshi_3076 at 3244.891 kb on + strand, within Dshi_3076 at 3244.910 kb on - strand, within Dshi_3076 at 3244.998 kb on + strand, within Dshi_3076 at 3245.063 kb on + strand, within Dshi_3076 at 3245.081 kb on + strand, within Dshi_3076 at 3245.096 kb on - strand at 3245.199 kb on + strand at 3245.215 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrate 300 mM remove 3,242,662 - +0.7 3,242,790 + +0.4 3,244,482 - -0.2 3,244,573 + +0.7 3,244,581 - -0.6 3,244,593 + +0.3 3,244,602 - -0.4 3,244,606 - -3.7 3,244,724 - Dshi_3076 0.18 -0.7 3,244,734 + Dshi_3076 0.20 -1.1 3,244,740 - Dshi_3076 0.21 -2.1 3,244,742 - Dshi_3076 0.22 +0.7 3,244,772 + Dshi_3076 0.28 -2.2 3,244,891 + Dshi_3076 0.51 +0.1 3,244,910 - Dshi_3076 0.54 -0.5 3,244,998 + Dshi_3076 0.71 +0.7 3,245,063 + Dshi_3076 0.84 -1.3 3,245,081 + Dshi_3076 0.87 -2.5 3,245,096 - -1.1 3,245,199 + -0.9 3,245,215 + -0.8
Or see this region's nucleotide sequence