Experiment: m.b. nitrate 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2871 and Dshi_2872 overlap by 1 nucleotides Dshi_2872 and Dshi_2873 are separated by 12 nucleotides Dshi_2873 and Dshi_2874 are separated by 3 nucleotides
Dshi_2871: Dshi_2871 - MaoC domain protein dehydratase (RefSeq), at 3,026,266 to 3,027,297
_2871
Dshi_2872: Dshi_2872 - hypothetical protein (RefSeq), at 3,027,297 to 3,027,500
_2872
Dshi_2873: Dshi_2873 - NnrUfamily protein (RefSeq), at 3,027,513 to 3,028,076
_2873
Dshi_2874: Dshi_2874 - Citrate (pro-3S)-lyase (RefSeq), at 3,028,080 to 3,028,967
_2874
Position (kb)
3027
3028
3029 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3026.558 kb on - strand, within Dshi_2871 at 3026.565 kb on + strand, within Dshi_2871 at 3026.592 kb on + strand, within Dshi_2871 at 3026.700 kb on + strand, within Dshi_2871 at 3026.741 kb on + strand, within Dshi_2871 at 3026.867 kb on - strand, within Dshi_2871 at 3026.886 kb on - strand, within Dshi_2871 at 3027.032 kb on - strand, within Dshi_2871 at 3027.041 kb on - strand, within Dshi_2871 at 3027.131 kb on + strand, within Dshi_2871 at 3027.131 kb on + strand, within Dshi_2871 at 3027.188 kb on + strand, within Dshi_2871 at 3027.211 kb on + strand at 3027.344 kb on - strand, within Dshi_2872 at 3027.401 kb on - strand, within Dshi_2872 at 3027.575 kb on - strand, within Dshi_2873 at 3027.684 kb on - strand, within Dshi_2873 at 3027.793 kb on + strand, within Dshi_2873 at 3027.793 kb on + strand, within Dshi_2873 at 3027.878 kb on - strand, within Dshi_2873 at 3027.880 kb on - strand, within Dshi_2873 at 3028.005 kb on - strand, within Dshi_2873 at 3028.077 kb on + strand at 3028.090 kb on + strand at 3028.205 kb on + strand, within Dshi_2874 at 3028.296 kb on + strand, within Dshi_2874 at 3028.430 kb on + strand, within Dshi_2874 at 3028.435 kb on + strand, within Dshi_2874 at 3028.438 kb on - strand, within Dshi_2874 at 3028.761 kb on - strand, within Dshi_2874 at 3028.777 kb on + strand, within Dshi_2874 at 3028.818 kb on - strand, within Dshi_2874 at 3028.901 kb on + strand at 3028.909 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrate 300 mM remove 3,026,558 - Dshi_2871 0.28 +4.3 3,026,565 + Dshi_2871 0.29 -0.3 3,026,592 + Dshi_2871 0.32 +2.0 3,026,700 + Dshi_2871 0.42 +2.8 3,026,741 + Dshi_2871 0.46 +0.8 3,026,867 - Dshi_2871 0.58 +2.2 3,026,886 - Dshi_2871 0.60 -2.0 3,027,032 - Dshi_2871 0.74 +0.8 3,027,041 - Dshi_2871 0.75 +0.2 3,027,131 + Dshi_2871 0.84 +1.4 3,027,131 + Dshi_2871 0.84 +2.2 3,027,188 + Dshi_2871 0.89 +0.8 3,027,211 + +0.8 3,027,344 - Dshi_2872 0.23 -2.0 3,027,401 - Dshi_2872 0.51 +0.0 3,027,575 - Dshi_2873 0.11 +0.3 3,027,684 - Dshi_2873 0.30 +1.1 3,027,793 + Dshi_2873 0.50 -0.7 3,027,793 + Dshi_2873 0.50 -1.3 3,027,878 - Dshi_2873 0.65 -0.2 3,027,880 - Dshi_2873 0.65 -0.7 3,028,005 - Dshi_2873 0.87 -0.8 3,028,077 + -0.6 3,028,090 + +0.1 3,028,205 + Dshi_2874 0.14 +1.9 3,028,296 + Dshi_2874 0.24 +0.5 3,028,430 + Dshi_2874 0.39 +0.7 3,028,435 + Dshi_2874 0.40 +0.8 3,028,438 - Dshi_2874 0.40 +0.1 3,028,761 - Dshi_2874 0.77 +1.4 3,028,777 + Dshi_2874 0.78 -1.5 3,028,818 - Dshi_2874 0.83 -1.3 3,028,901 + +2.1 3,028,909 - +0.1
Or see this region's nucleotide sequence