Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2873

Experiment: m.b. nitrate 300 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2871 and Dshi_2872 overlap by 1 nucleotidesDshi_2872 and Dshi_2873 are separated by 12 nucleotidesDshi_2873 and Dshi_2874 are separated by 3 nucleotides Dshi_2871: Dshi_2871 - MaoC domain protein dehydratase (RefSeq), at 3,026,266 to 3,027,297 _2871 Dshi_2872: Dshi_2872 - hypothetical protein (RefSeq), at 3,027,297 to 3,027,500 _2872 Dshi_2873: Dshi_2873 - NnrUfamily protein (RefSeq), at 3,027,513 to 3,028,076 _2873 Dshi_2874: Dshi_2874 - Citrate (pro-3S)-lyase (RefSeq), at 3,028,080 to 3,028,967 _2874 Position (kb) 3027 3028 3029Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3026.558 kb on - strand, within Dshi_2871at 3026.565 kb on + strand, within Dshi_2871at 3026.592 kb on + strand, within Dshi_2871at 3026.700 kb on + strand, within Dshi_2871at 3026.741 kb on + strand, within Dshi_2871at 3026.867 kb on - strand, within Dshi_2871at 3026.886 kb on - strand, within Dshi_2871at 3027.032 kb on - strand, within Dshi_2871at 3027.041 kb on - strand, within Dshi_2871at 3027.131 kb on + strand, within Dshi_2871at 3027.131 kb on + strand, within Dshi_2871at 3027.188 kb on + strand, within Dshi_2871at 3027.211 kb on + strandat 3027.344 kb on - strand, within Dshi_2872at 3027.401 kb on - strand, within Dshi_2872at 3027.575 kb on - strand, within Dshi_2873at 3027.684 kb on - strand, within Dshi_2873at 3027.793 kb on + strand, within Dshi_2873at 3027.793 kb on + strand, within Dshi_2873at 3027.878 kb on - strand, within Dshi_2873at 3027.880 kb on - strand, within Dshi_2873at 3028.005 kb on - strand, within Dshi_2873at 3028.077 kb on + strandat 3028.090 kb on + strandat 3028.205 kb on + strand, within Dshi_2874at 3028.296 kb on + strand, within Dshi_2874at 3028.430 kb on + strand, within Dshi_2874at 3028.435 kb on + strand, within Dshi_2874at 3028.438 kb on - strand, within Dshi_2874at 3028.761 kb on - strand, within Dshi_2874at 3028.777 kb on + strand, within Dshi_2874at 3028.818 kb on - strand, within Dshi_2874at 3028.901 kb on + strandat 3028.909 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrate 300 mM
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3,026,558 - Dshi_2871 0.28 +4.3
3,026,565 + Dshi_2871 0.29 -0.3
3,026,592 + Dshi_2871 0.32 +2.0
3,026,700 + Dshi_2871 0.42 +2.8
3,026,741 + Dshi_2871 0.46 +0.8
3,026,867 - Dshi_2871 0.58 +2.2
3,026,886 - Dshi_2871 0.60 -2.0
3,027,032 - Dshi_2871 0.74 +0.8
3,027,041 - Dshi_2871 0.75 +0.2
3,027,131 + Dshi_2871 0.84 +1.4
3,027,131 + Dshi_2871 0.84 +2.2
3,027,188 + Dshi_2871 0.89 +0.8
3,027,211 + +0.8
3,027,344 - Dshi_2872 0.23 -2.0
3,027,401 - Dshi_2872 0.51 +0.0
3,027,575 - Dshi_2873 0.11 +0.3
3,027,684 - Dshi_2873 0.30 +1.1
3,027,793 + Dshi_2873 0.50 -0.7
3,027,793 + Dshi_2873 0.50 -1.3
3,027,878 - Dshi_2873 0.65 -0.2
3,027,880 - Dshi_2873 0.65 -0.7
3,028,005 - Dshi_2873 0.87 -0.8
3,028,077 + -0.6
3,028,090 + +0.1
3,028,205 + Dshi_2874 0.14 +1.9
3,028,296 + Dshi_2874 0.24 +0.5
3,028,430 + Dshi_2874 0.39 +0.7
3,028,435 + Dshi_2874 0.40 +0.8
3,028,438 - Dshi_2874 0.40 +0.1
3,028,761 - Dshi_2874 0.77 +1.4
3,028,777 + Dshi_2874 0.78 -1.5
3,028,818 - Dshi_2874 0.83 -1.3
3,028,901 + +2.1
3,028,909 - +0.1

Or see this region's nucleotide sequence